Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05371 ATGGAGTGGAATGGGAGCACAAGACGCTTTGTTCCTAGAGCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCATAACCCATATCCAGGAATGGAAATGAAACAACAAGCAACACTGATGGAGACACCTGCACCAATATTGGAAAAAATGAACCATGAGAAGAAGAAGCGATTAACAAATGACCAGCTTGACTCACTGGAGAGTAGTTTCCAGAAGGAGATAAAGTTGGACCCTGATAGGAAGATGAAGCTTGCTAAGGAGTTAGGCCTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGGCAAAGCAACTTGAACACTTGTATGATTCACTCAAACAAGAATTTGATGTAGTATCAAAGGAAAAACAGAAACTTGAAGCAGAGGTGGTGCAGGTTATGAAGTTAAAGGGGATGCTGAGAGAGCAAGGTTCTAGAACGCAACAAGTGTCAGCAGAAATCTCTGGTGAGGAAACAGTAGATCAAAGCACGTCAGAGGCTCTGCGTTGCTCAAACAGGGCGCGGGGAAAGATTCATCATTATCAGCAGAGTGAGGGAAACTGTTCTTTCACTAATACTCACATGGTCATGGAGGATTATAACACAGTTCCACTTATGCCCTATTGGCCTGGATTTCCTTCTTATCCTTAG 672 0.439 MEWNGSTRRFVPRAESSLSFLYNYNHNPYPGMEMKQQATLMETPAPILEKMNHEKKKRLTNDQLDSLESSFQKEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEFDVVSKEKQKLEAEVVQVMKLKGMLREQGSRTQQVSAEISGEETVDQSTSEALRCSNRARGKIHHYQQSEGNCSFTNTHMVMEDYNTVPLMPYWPGFPSYP. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05371 223 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Seca7g05371 223 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Seca7g05371 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 179 IPR045224 GO:0003700
Seca7g05371 223 SMART HOX_1 53 114 IPR001356 GO:0003677
Seca7g05371 223 CDD homeodomain 55 111 IPR001356 GO:0003677
Seca7g05371 223 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Seca7g05371 223 FunFam Putative homeobox-leucine zipper protein ATHB-51 52 115 - -
Seca7g05371 223 Coils Coil 102 136 - -
Seca7g05371 223 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Seca7g05371 223 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Seca7g05371 223 Gene3D - 51 114 - -
Seca7g05371 223 Pfam Homeobox associated leucine zipper 110 139 IPR003106 GO:0006355|GO:0043565
Seca7g05371 223 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Seca7g05371 223 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05371 Seca-Chr7 152277871 152280179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05371 3 152 Homeobox Transcription Factor Family AT2G36610 48.864 2.40e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g05371 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05371 - - gmx:100778007 328.561