Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05365 ATGAACCAACTTCATTTTCATGTTCATCCAATGATGAATCATGTCTTCTTCTTCTTCCTCTGCCTCTTCCTGTTACCATGTTTAACACTCAGTCTCCATCATAATGACACACACGCACTCACCATCTTCCGTAGCCAAACCGACACACATGGCCACCTTCTTTCCAACTGGACCGGCGGCGACGCCTGCTCCGCCGCGTGGCGCGGCGTCGATTGTTCCCCAAACGGCCGTGTTACTTCCCTCTCCCTTCCTTCCCTCAATCTCCGAGGACCGATCGACGCTCTCGCTCCTCTCTCCCACCTCCGCCTCCTTGACCTCCACGATAACCGCTTAAACGGCACCGTTTCACCTTCTTTCCTCTCTAACTGCACTAATCTGAAGCTTCTCTACCTCGCCGGAAACGACTTCTCCGGCGAGATCCCGCCGGAGATATCCTCCCCAAAAGGCCTCCTCCGTCTCGACCTCTCCGACAACAACATCGCCGGCGATATCCCCGACGAAGTTTCCCGTTTATCTGAGCTCCTCACTCTGAGACTGCAGAACAACGCACTCTCCGGCCACATCCCTGACCTCTCCGCCGCCATGCCGAACCTCACGGAGCTTAACATGACCAACAACGAGTTCTACGGTCGGTTACCCAACTCCATGATAAAAAGGTTCGGCGAAGCCAGCTTCTCCGGCAACGAAGGTCTATGCGGTGCAACACCACTCCCTGTTTGTTCCTTCACAGAGAACATTCCTTCTCCTCCTTCTGATGAACCGGTTCAGACCGTTCCTTCAAACCCGAGCTCGTTCCCTGAAACAAGCGTGATCGCTAGACCAGGAAGTCAACCCCGTAAAGGGTTGAGCCCTGGCGCCATTGTTGCCATTGTGGTGGCTAATTGTGTTGCGTTGCTTGTAGTGACTTCTTTTGTGGTGGCTCATTGTTGTGCAAGAGGGAGAGGGTCTAACTCTAACTCCATGGTGGGGAGTAGTGAGAAGAGGAAGAGTGGGAGCAGTTATGGGAGTGAGAAAAAGGTGTATGCAAGTGGTTATGGTGGTGATAGTGATGGGACTAGTGGCACTGATAGGAGCAAGCTTGTGTTTTTTGATAGGAGGAGTGAGTTTGAGTTGGAGGATCTTCTTCGTGCATCTGCAGAGATGCTTGGGAAGGGTAGTTTGGGAACGGTTTATAGAGCAGTTCTTGATGATGGTTGCACTGTGGCTGTGAAGAGGCTCAAAGATGCAAACCCTTGTCCCAGGCATGAGTTTGAGCAGTATATGGATGTCATTGGGAAGCTCAAGCACCCTAACATTGTTAGACTCAGAGCTTATTACTATGCCAAGGAAGAAAAGCTTCTTGTTTATGATTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCTGGGAGAATTCCATTGGATTGGACTACAAGAGTGAGCTTGGTGTTAGGGGCAGCAAGAGGGCTAGCTCGGATTCATGCAGAGTATAGTGCAGCTAAAGTGCCTCATGGGAATGTGAAATCTTCCAATGTGCTTCTTGACAAGAATGGTGTTGCTTGCATCTCTGATTTTGGGTTGTCACTCTTGTTGAACCCTGTTCATGCCATTGCAAGATTGGGAGGGTACAGGGCTCCTGAACAGGTAGAACAGAAGAGGCTGTCACAGCAAGCTGATGTGTACAGTTTTGGGGTGTTGCTGTTGGAGGTTCTTACAGGGAGAGCTCCTTCTTTACAGTACCCTTCCCCAGCTCGTCCTCGTATGGATGAAGAGGAACAAGGTGTGGATCTTCCCAAATGGGTTCGCTCAGTTGTGAAGGAAGAGTGGACTGCAGAGGTGTTTGATCAAGAACTCCTCCGCTACAAAAACATTGATGAAGAGCTTGTGGCAATGCTGCATGTTGGGTTAGCTTGTGTGGTGCCACAGCCAGAGAAGAGGCCAACCATGGCAGAGGTTGTCAAGATGATTGAGGATATCAGGGTGGAACAATCTCCTCTTGGGGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCCTCCCCACCACTGAAGATGGTCTAGCTTAG 2064 0.5048 MNQLHFHVHPMMNHVFFFFLCLFLLPCLTLSLHHNDTHALTIFRSQTDTHGHLLSNWTGGDACSAAWRGVDCSPNGRVTSLSLPSLNLRGPIDALAPLSHLRLLDLHDNRLNGTVSPSFLSNCTNLKLLYLAGNDFSGEIPPEISSPKGLLRLDLSDNNIAGDIPDEVSRLSELLTLRLQNNALSGHIPDLSAAMPNLTELNMTNNEFYGRLPNSMIKRFGEASFSGNEGLCGATPLPVCSFTENIPSPPSDEPVQTVPSNPSSFPETSVIARPGSQPRKGLSPGAIVAIVVANCVALLVVTSFVVAHCCARGRGSNSNSMVGSSEKRKSGSSYGSEKKVYASGYGGDSDGTSGTDRSKLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRHEFEQYMDVIGKLKHPNIVRLRAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRVSLVLGAARGLARIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQVEQKRLSQQADVYSFGVLLLEVLTGRAPSLQYPSPARPRMDEEEQGVDLPKWVRSVVKEEWTAEVFDQELLRYKNIDEELVAMLHVGLACVVPQPEKRPTMAEVVKMIEDIRVEQSPLGEDYDESRNSLSPSLPTTEDGLA. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05365 687 Pfam Protein kinase domain 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05365 687 MobiDBLite consensus disorder prediction 245 271 - -
Seca7g05365 687 MobiDBLite consensus disorder prediction 245 279 - -
Seca7g05365 687 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 452 666 - -
Seca7g05365 687 FunFam Nuclear pore complex protein NUP107 33 190 - -
Seca7g05365 687 FunFam pollen receptor-like kinase 1 347 451 - -
Seca7g05365 687 MobiDBLite consensus disorder prediction 315 330 - -
Seca7g05365 687 SUPERFAMILY L domain-like 33 217 - -
Seca7g05365 687 SUPERFAMILY Protein kinase-like (PK-like) 380 654 IPR011009 -
Seca7g05365 687 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 659 IPR046959 -
Seca7g05365 687 Gene3D Transferase(Phosphotransferase) domain 1 452 674 - -
Seca7g05365 687 Gene3D Ribonuclease Inhibitor 35 149 IPR032675 -
Seca7g05365 687 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515
Seca7g05365 687 MobiDBLite consensus disorder prediction 662 687 - -
Seca7g05365 687 MobiDBLite consensus disorder prediction 315 336 - -
Seca7g05365 687 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Seca7g05365 687 ProSiteProfiles Protein kinase domain profile. 376 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05365 687 CDD STKc_IRAK 382 657 - -
Seca7g05365 687 Gene3D Ribonuclease Inhibitor 150 240 IPR032675 -
Seca7g05365 687 Gene3D Phosphorylase Kinase; domain 1 351 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05365 Seca-Chr7 152223762 152225944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05365 29 683 Receptor kinase-like Gene Family AT2G36570 68.271 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g05365 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05365 - - gmx:100804135 1054.66