Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g05362 | ATGGAAGAACCTGTGAAGAACACTATTTCTGCAGCAGGGCCATCACCCGCACAACCACAACCAGTAACCACCTCAGTGCCTCAGGTGATGAACATGAACATGAACATGAACGTGAACATGGGGAGCAACACTAGTGGGACAGCAACGGTTCCTGCACCTGCTCCTGCAGTGCAAGCCACAGCAGTAGCAACAGTGACAACAACACCTGGAAGCACTGGAGGAGGAGGAGGGAGCTTTGATTTGTTTGGTAAAAAGAAGAGAGGGAGGCCAAGAAAATATGACTCAGATGGGAACTTGAGGTTAACGTACAAGCAGAGTGCAACCCCAACACCACCACCTTCACAAGGTTTCACTTTGTCAACAACAAATGAGTTTTCTTCCAAAAGGGGTCGTGGTAGGCCAACTGGGTTTGGAGGAAACTACCAACTCCTTGCTTCTTTTGGTGAGGTTTTTGCAAGCACGGCTGCTGGGGATTTTACACCGCATGTAGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCATGTCATTTGCCCAGAAGGGTCCAAGAGGAATATGCATTCTTTCTGCTAATGGAGCTATCTCTAATGTCACCATACGGCAACCCGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCGTTCACTGTCTCCGACAATAGTGGCATGAAGAATAGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTGATAGGAGGTGGTGTTGCTGGTCTATTGACAGCTGCTGGCCCCATCCAAATTGTAGTGGGAAGCTTTATGCCAAATGGTCACAAGACTCATAAAAGAAAGTACCAACGTGAACACACAGTGGCATCCCCTCCTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGGCCTATTTCACAAGCAAATGCTGATGGTGAAAACTTTCTGATGCATATGTCTCAGTTACCAACTCAAAGTCAGAGTCAGAGAGAATCTCTAAGTGTTTCAAGTGATAAACAAAACCTAGATGCCACACCTGATGCTGCTACATGGAATGGTTCTGAAGAATTTTCAGACCAGAGGACATCCCCTGACATCAACATATCTTTACCTGATGAATAG | 1134 | 0.4665 | MEEPVKNTISAAGPSPAQPQPVTTSVPQVMNMNMNMNVNMGSNTSGTATVPAPAPAVQATAVATVTTTPGSTGGGGGSFDLFGKKKRGRPRKYDSDGNLRLTYKQSATPTPPPSQGFTLSTTNEFSSKRGRGRPTGFGGNYQLLASFGEVFASTAAGDFTPHVVTVYTGEDVAGKIMSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDNSGMKNRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGHKTHKRKYQREHTVASPPSAGPDTVTAARPISQANADGENFLMHMSQLPTQSQSQRESLSVSSDKQNLDATPDAATWNGSEEFSDQRTSPDINISLPDE. | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 99 | 129 | - | - | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 82 | 98 | - | - | |
| Seca7g05362 | 377 | ProSiteProfiles | PPC domain profile profile. | 156 | 298 | IPR005175 | - | |
| Seca7g05362 | 377 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 47 | 344 | IPR039605 | GO:0003680 | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 67 | 133 | - | - | |
| Seca7g05362 | 377 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 161 | 274 | IPR005175 | - | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 276 | 304 | - | - | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 327 | 377 | - | - | |
| Seca7g05362 | 377 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 157 | 286 | - | - | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Seca7g05362 | 377 | Gene3D | - | 161 | 293 | - | - | |
| Seca7g05362 | 377 | SMART | AT_hook_2 | 84 | 96 | IPR017956 | GO:0003677 | |
| Seca7g05362 | 377 | SMART | AT_hook_2 | 128 | 140 | IPR017956 | GO:0003677 | |
| Seca7g05362 | 377 | MobiDBLite | consensus disorder prediction | 327 | 371 | - | - | |
| Seca7g05362 | 377 | CDD | DUF296 | 160 | 274 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g05362 | Seca-Chr7 | 152153505 | 152157307 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca7g05362 | 84 | 345 | AT-hook Motif Nuclear Localized (AHL) Family | AT4G12080 | 48.162 | 3.86e-69 | 219 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g05362 | - | - | gmx:100779227 | 476.478 |