Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05341 ATGCGTAATTCTTCTAGCTCTGCAGGAGAAACAGGACGTCATCCAGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTGTCTGAAATCAGAGAGCCAAAAAAGCCTAACAGAATTTGGTTAGGCACATTCCCTACACCTGAAATGGCTGCTGTTGCTTATGATGTTGCTGCTTTTGCTCTTAAGGGTAAGGATGCTGAGCTTAACTTCCCTGACTCAGCTTCTTCATTGCCTGTCCCTGCTTCTTTGTCTGCCCGTGATATTCAGGTGGCTGCAGCTAGTGCTGCTGCTGCTGCTGGGGCAGCGAGGGATGCTCTGTCTGCTGGTGGTAGTAGTAGTAGTACTGTTGAGGGAATCAGGAATAATTATTTTTCATCACATGAACAGGTGGAAGGGGTTAATCATCAGTTTGTGGATGAGGATTTGATCTTTGATATGCCTAATGTTCTGGTTAATATGGCACAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTGGGGAGGCTGATGACAACATGGATCAAGAGCCAAGCCTCTGGAATTTCCCTTAA 561 0.4706 MRNSSSSAGETGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAFALKGKDAELNFPDSASSLPVPASLSARDIQVAAASAAAAAGAARDALSAGGSSSSTVEGIRNNYFSSHEQVEGVNHQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGGEADDNMDQEPSLWNFP. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05341 186 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Seca7g05341 186 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Seca7g05341 186 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Seca7g05341 186 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Seca7g05341 186 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Seca7g05341 186 MobiDBLite consensus disorder prediction 1 29 - -
Seca7g05341 186 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Seca7g05341 186 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Seca7g05341 186 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Seca7g05341 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 184 IPR045277 GO:0003700
Seca7g05341 186 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05341 Seca-Chr7 151747138 151747698 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05341 6 186 AP2-EREBP Transcription Factor Family AT2G36450 61.081 9.82e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g05341 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05341 - - pvu:PHAVU_007G222600g 229.565