Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05340 ATGAAGAATAGAACCGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTGATAGGAGGTGGAGTTGCTGGTCTATTGACAGCTGCTGGCCCCATCCAAATTGTAGTGGGAAGCTTTATGCCAAATGGTCACAAGACTCATAAAAGAAAGTACCAACGTGAACACACAGTGGCATCCCCTCCTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGGCCTATTTCACAAGCAAATGCTGATGGTGAAAACTTTCTGATGCATATGTCTCAGTTACCAACTCAAAGTCAGAGTCAGAGAGAATCTCTAAGTGTTTCAAGTGATAAACAAAACCTAGATGCCACACCTGATGCTGCTACATGGAATGGTTCTGAAGAATTTTCAGACCAGAGGACATCCCCTGACATCAACACTAACAAAAGCAATAATGGTATTACTTCATTGTGA 450 0.4444 MKNRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGHKTHKRKYQREHTVASPPSAGPDTVTAARPISQANADGENFLMHMSQLPTQSQSQRESLSVSSDKQNLDATPDAATWNGSEEFSDQRTSPDINTNKSNNGITSL. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05340 149 CDD DUF296 3 41 IPR005175 -
Seca7g05340 149 Gene3D - 1 61 - -
Seca7g05340 149 Pfam Plants and Prokaryotes Conserved (PCC) domain 6 41 IPR005175 -
Seca7g05340 149 SUPERFAMILY AF0104/ALDC/Ptd012-like 6 54 - -
Seca7g05340 149 MobiDBLite consensus disorder prediction 89 149 - -
Seca7g05340 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 2 112 IPR039605 GO:0003680
Seca7g05340 149 MobiDBLite consensus disorder prediction 44 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05340 Seca-Chr7 151740142 151740950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05340 2 112 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.429 2.07e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05340 - - gmx:100779227 217.238