Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05339 ATGCCGGAAATGCAGAAACGAAAGGCTGGAAGGAAGAAGTTCCAAGAGACTCGACACCCAATTTACAAAGGTGTGAGGCAGAGAAATGGGAAGTGGGTGTGTGAGCTACGACAACCTAACAACAAAACACGTGTTTGGCTTGGAACTTTTGCTCACCCTGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTGGCTTTCAAAGGTGATGCTGCTTCCTTGAATTTCCCACAATCTGCTACCTCTTTGCCGCGCCTTAATTCTCGAACCTCTTCTATTAGAGCCATTCAGTTTGCGGCAATACAAGCCGCTGAGAAACACTTTTCTTGCATCCGTCATGATGCCAGTAGTGAGATTGTTCCCGCCAAGAATGATAACGGTTCGGGTGAGTTGTTGTCATTGGATTGCATGGGGATCAGGTCCGCGGAGGAAGATTCTGGAAGGTTCTTTTGGGATGAAGAGGAGGTGTTCAACATGCCGGTTTTGATAGACAGTTTGGCGGAAGGGTTGATTATCACACCGCCTGCCTTGCAGAGAGGATTCAATTGGGCGGGTGGAGAAACTACTATGGACTTGACTCTTTGGGGAAATTGA 594 0.4747 MPEMQKRKAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFAHPDMAAIAYDVAALAFKGDAASLNFPQSATSLPRLNSRTSSIRAIQFAAIQAAEKHFSCIRHDASSEIVPAKNDNGSGELLSLDCMGIRSAEEDSGRFFWDEEEVFNMPVLIDSLAEGLIITPPALQRGFNWAGGETTMDLTLWGN. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05339 197 ProSiteProfiles AP2/ERF domain profile. 21 77 IPR001471 GO:0003700|GO:0006355
Seca7g05339 197 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Seca7g05339 197 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Seca7g05339 197 SMART rav1_2 21 83 IPR001471 GO:0003700|GO:0006355
Seca7g05339 197 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Seca7g05339 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 195 IPR045277 GO:0003700
Seca7g05339 197 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Seca7g05339 197 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Seca7g05339 197 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05339 Seca-Chr7 151700148 151700741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05339 6 195 AP2-EREBP Transcription Factor Family AT4G25490 42.932 2.50e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g05339 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05339 - - gmx:100778541 279.256