Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05337 ATGGACTTGCAGCTGAAGCAATGGAAAAACCAGTATGAGTCAGAGCAACAACATTCTACAAAGAAACCAAAATTTCTACCTGAACCCCATCAACAGCCACAATCTCCTGCCTCTGCATTCCCTTTGTTTGTACCTGAAATCAACAGCAAAGTCAGCACCCTGTCATCCTTATCTGATTCAACCTTAGCTGCTGTTACCAGATTTCCCAGAATGGGGAGTTATTTCAGCTTTGCACAATGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGATACATGTTAGCTGGTGCTGCTGTTCCTCCTGAGCTTCTTCAACCCATCAAGAAAAGCACTCTTCCTTCCACTTCATATTTCCTCCAACACCCTCTTCAACACTATCACCCTCATTTGTTGCAATCAGGGTACTGGGGAAGAGGAGCCATGGATCCAGAGCCTGGCCGGTGCCGGAGGACCGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTACTGCGAGCGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCAATACCAACTAGTGCCACTGGTGCTGATGGTGGATCTCATTCTCTTGGTGCTACAACTTCCATTTCTTCACCCTCTATAGCAGCTTCCTCATTCAAATCCCCATTTGATCTCCTTCACCTCAATGAACGTAGTTCCTCTGGGATTAAGAATGATAGCAAGAGCTTGTTTGAAAACAAAGATCATGTGGATGGGGATGACAGATCTAATGGCCATATCCTGAGGCATTTCTTTGATGATTGGCCTCGTGGTGAAAGCAATGCTGGCAGGATCAACTCATCAGTTACTTGCCTCTCTATTTCAACGCCTTCCTCTGATGTGTCATTGAAATTGTCCACTGGCTACAGAGAGGAACAATGCCCAAGAAATGAGAATGTGGAGGCACAGCAGCAACTGCAGTTGAACTGGGCGGAAGGGTGGAGATCAGCTACTCAATTGGCTTCCATGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCCCAACTTCATCACAAACAAGTGTACTTCTTCAATTGCCTCTTAGTTCTGCATCTGAACTAGCTTCCTTAGCGCCTAGATTTGGTTAA 1128 0.4725 MDLQLKQWKNQYESEQQHSTKKPKFLPEPHQQPQSPASAFPLFVPEINSKVSTLSSLSDSTLAAVTRFPRMGSYFSFAQWQELELQALIFRYMLAGAAVPPELLQPIKKSTLPSTSYFLQHPLQHYHPHLLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPIPTSATGADGGSHSLGATTSISSPSIAASSFKSPFDLLHLNERSSSGIKNDSKSLFENKDHVDGDDRSNGHILRHFFDDWPRGESNAGRINSSVTCLSISTPSSDVSLKLSTGYREEQCPRNENVEAQQQLQLNWAEGWRSATQLASMGGPLAEALRSSTPTSSQTSVLLQLPLSSASELASLAPRFG. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05337 375 MobiDBLite consensus disorder prediction 240 255 - -
Seca7g05337 375 MobiDBLite consensus disorder prediction 174 204 - -
Seca7g05337 375 ProSiteProfiles WRC domain profile. 142 186 IPR014977 -
Seca7g05337 375 PANTHER GROWTH-REGULATING FACTOR 5 32 291 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca7g05337 375 MobiDBLite consensus disorder prediction 1 38 - -
Seca7g05337 375 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca7g05337 375 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca7g05337 375 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca7g05337 375 MobiDBLite consensus disorder prediction 235 255 - -
Seca7g05337 375 Pfam WRC 143 185 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05337 Seca-Chr7 151621768 151624244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05337 1 363 GRF Transcription Factor Family AT3G52910 50.000 5.22e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca7g05337 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05337 - - gmx:100814842 458.759