Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05331 ATGAAGGCGATCGCTGCGTATTTACTGGCCGTTCTTGGAGGCAACACCAGCCCCTCCGCTGATGACATCAAGAACATCCTTGGCTCAGTTGGAGCAGAAGCAGATGATGATAGGATTGAACTATTTTTGTCTGAAATTAAGGGTAAGGATATAGTTGAGGTTATTGCTGCCGGTAGGGAAAAGTTGGCATCAGTGCCTGCTGGTGGTGGTGGTGGTGTTGCGGTTGCTGCCGCACCTGGTGGAGGTGGTGCTGCTGCTGCTCCAGCAGCTGCTGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGATGATGATATGGGCTTCAGCCTCTTTGATTAA 348 0.5057 MKAIAAYLLAVLGGNTSPSADDIKNILGSVGAEADDDRIELFLSEIKGKDIVEVIAAGREKLASVPAGGGGGVAVAAAPGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05331 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Seca7g05331 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Seca7g05331 115 Gene3D - 1 59 IPR038716 -
Seca7g05331 115 MobiDBLite consensus disorder prediction 79 115 - -
Seca7g05331 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca7g05331 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca7g05331 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05331 Seca-Chr7 151556407 151558028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05331 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 61.739 2.06e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05331 K02943 - qsu:111996733 136.732