Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05267 ATGTCCATAAACCACTACTCAATGGACCTTCCAGAAACGACACTATGGTGGACTCAACAGCAACAGCAACAGCAACCCATGTTAGTGGAACCAATCCAAAACCCTTCCACTTCTTGGCCCCTCCAACAACACCACCAACCCACATGGTTCACTACTCCTCCAGACCCACCTTTACAATACCCCACCCATTTCAACCTCAACAATCAAAACGACGATGAAGAAGAAGATGATGAAGAAAACGACACTAACACTAACACTAACAACAACAACGACCAAGCCACCACAACAACACAGCAAGAAGAAGAGAAGGAACCCATGTTCGAGAAGCCATTAACCCCCAGTGACGTGGGAAAGCTAAACCGTCTCGTAATCCCAAAACAGCACGCGGAGAAGTACTTCCCTTTGGGTGCTTCTGGTGGTGGCGGTGACTCGGGCGAGTGCAAAGGGCTGCTACTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGGTTCCGTTACTCGTATTGGAATAGCAGCCAGAGCTATGTTTTGACCAAAGGTTGGAGCCGTTACGTGAAGGACAAACGCCTTGATGCAGGCGACGTCGTTTTGTTCCAGCGCCACCGTGTCGACGCTCAGAGGCTCTTCATTAACTGGAGGAGAAGGAAGCCAAGTGGCACACCGCCGGTGCACGTTAGCAGGATGGTGGGACACGGCAAGGGCAGTAGTGATGGGAATAGCAATAGTAAGAATGTGGGCGTGGGGTGGACCAGAGGGTTCTATTCTGCGCACCCTTATCCTACGCACCACCCCTTGCCATACCAACATGACTGTCTTCATGCAGGTAGAGGGTCCCAAGGACCGGTGGGGAAGAATTCAAGTTCTAGTTCGAGTTCAAGTTCAAGGGTACTTAGGCTGTTCGGAGTCAACATGGAATGCCAACCTGAACATGATTCTGGACCCGAATGCTCCTACAATATGCCATCAAGCGAGGGCACAGATTTCTACAACCATCATCAACCACCTAACTCTAATCCTCACCCTCACATGGTACGTCACCAATCATATTACCACTAG 1056 0.5047 MSINHYSMDLPETTLWWTQQQQQQQPMLVEPIQNPSTSWPLQQHHQPTWFTTPPDPPLQYPTHFNLNNQNDDEEEDDEENDTNTNTNNNNDQATTTTQQEEEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGASGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVDAQRLFINWRRRKPSGTPPVHVSRMVGHGKGSSDGNSNSKNVGVGWTRGFYSAHPYPTHHPLPYQHDCLHAGRGSQGPVGKNSSSSSSSSSRVLRLFGVNMECQPEHDSGPECSYNMPSSEGTDFYNHHQPPNSNPHPHMVRHQSYYH. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05267 351 MobiDBLite consensus disorder prediction 316 343 - -
Seca7g05267 351 CDD B3_DNA 105 206 IPR003340 GO:0003677
Seca7g05267 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 316 IPR044800 GO:0003700
Seca7g05267 351 MobiDBLite consensus disorder prediction 267 294 - -
Seca7g05267 351 FunFam B3 domain-containing protein 100 224 - -
Seca7g05267 351 Pfam B3 DNA binding domain 107 215 IPR003340 GO:0003677
Seca7g05267 351 MobiDBLite consensus disorder prediction 218 242 - -
Seca7g05267 351 SMART B3_2 107 216 IPR003340 GO:0003677
Seca7g05267 351 MobiDBLite consensus disorder prediction 308 351 - -
Seca7g05267 351 SUPERFAMILY DNA-binding pseudobarrel domain 103 215 IPR015300 -
Seca7g05267 351 Gene3D - 94 221 IPR015300 -
Seca7g05267 351 ProSiteProfiles B3 DNA-binding domain profile. 107 216 IPR003340 GO:0003677
Seca7g05267 351 MobiDBLite consensus disorder prediction 32 49 - -
Seca7g05267 351 MobiDBLite consensus disorder prediction 280 294 - -
Seca7g05267 351 MobiDBLite consensus disorder prediction 32 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05267 Seca-Chr7 150644179 150646668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05267 100 329 RAV Transcription Factor Family AT5G06250 51.477 4.17e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g05267 B3 1.7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05267 K09287 - gmx:100795470 369.777