Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05250 ATGTCCGGCGGCGCTGGAGCTTCCGACCGTCGCGTCTCGCCGCCTAGGGAGGTTGCCGGCGTCCCAAACCGGCCACCGCTGAAACGCCACCTGGCCTTCGCATCAACGAAGCCGCCATTTGCCCCGCCGGATGATTACCATAGCTTTGCCTCAGTCGAGTCCAGGAGAGTCGCCGATCACGAGCCTGAAGCTGTCGTTGTTAGATCTCCGTTCATGAAGCGGAAGAGTGGAATCAATGACAATGAAGGCGACTCACAGAAGTGGAGTAACAGCCCTGGATACACTAACATAATAAGCAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACATAATAAGTCAAAGGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTCACTCCTGCTGGTAGCTGTCGTTATGATAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTTAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACCCTGGAGGTCCAAAAGAGGAGGATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTTAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACTTCTGGTGAGGTGGATGGTGATATCTCTGTGCTCAAGGCAGAAGTTGAACAACTTTCTTTGGAAGAGCACAAATTAGATGATCAAATAAGAGAAATGCAAGAAAGGCTGAGAAGTTTGAGTGAAAATGAAAACAACCAGAAGTGTCTTTTTGTGACCGAAGAAGATATTAAGGGACTACCTTGCTTCCAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACCACCCTTGAAGTCCCTGAACCTGAGGAAGCTGTCGACTATCCACAGCGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTATCAGTCAATTCGAAGAGAAATTTGAAGATGTTAATGGTGCTGAGCCCCCCATGAGCATCCCACTTGCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAAATGGTTCCTGCTGAGTGCAGTGGACAAGGGCTTGAACCCGAAGCTCAGCTCTCTTCTCATGCATATTCTGATCTAAATGCTTCACAAGAGTTTGCAGGGGGCATGATGAAGATTGTCCCTTCGGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGCATAACAGATATGTGGAGGACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTTCATCCTGACTTTGGAATCATCTCAAGGCCGCAAACTCCATCATCTGGGTTTCCTGAAACACCATCCACAGTAGCTAACTCTAATCAGAGGTGA 1407 0.4634 MSGGAGASDRRVSPPREVAGVPNRPPLKRHLAFASTKPPFAPPDDYHSFASVESRRVADHEPEAVVVRSPFMKRKSGINDNEGDSQKWSNSPGYTNIISSPFKTPVSAKGGRTHNKSKVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVEQLSLEEHKLDDQIREMQERLRSLSENENNQKCLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEDVNGAEPPMSIPLASSSGSNEQPVAEMVPAECSGQGLEPEAQLSSHAYSDLNASQEFAGGMMKIVPSDADNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLHPDFGIISRPQTPSSGFPETPSTVANSNQR. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05250 468 Gene3D - 141 214 IPR036388 -
Seca7g05250 468 Gene3D - 219 329 - -
Seca7g05250 468 MobiDBLite consensus disorder prediction 1 27 - -
Seca7g05250 468 MobiDBLite consensus disorder prediction 75 142 - -
Seca7g05250 468 MobiDBLite consensus disorder prediction 126 142 - -
Seca7g05250 468 Coils Coil 225 266 - -
Seca7g05250 468 MobiDBLite consensus disorder prediction 82 103 - -
Seca7g05250 468 FunFam E2F transcription factor 1 141 214 - -
Seca7g05250 468 PANTHER TRANSCRIPTION FACTOR E2F 75 430 IPR015633 GO:0000978|GO:0006357
Seca7g05250 468 CDD E2F_DD 225 329 IPR032198 GO:0046983
Seca7g05250 468 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Seca7g05250 468 MobiDBLite consensus disorder prediction 443 468 - -
Seca7g05250 468 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Seca7g05250 468 MobiDBLite consensus disorder prediction 446 468 - -
Seca7g05250 468 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Seca7g05250 468 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Seca7g05250 468 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05250 Seca-Chr7 150438844 150443731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05250 21 468 E2F-DP Transcription Factor Family AT2G36010 58.562 1.45e-174 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca7g05250 E2F_CC-MB 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05250 K06620 - gmx:100811762 793.112