Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05211 ATGGATGAAATTGAGATTCCACAGTATTTCATTTGCCCAATATCCCTCCAAATCATGAAAGATCCTGTAACTGCTATAACAGGCATCACATATGACAGAGACAGCATTGAGCACTGGCTATTCTCCAACAAGAACACAACATGTCCTGTTTCCAAACAGCCCCTTCCAAGAGACTCTGACTTAACCCCTAATCACACCCTTCGCCGCTTGATCCAAGCTTGGTGCACCCAAAATTCTGCACTTGGCATTGATAGAATTCCCACTCCAAAGCCACCACTTAATAAGATTCAAGTCCTGAAGCTTCTCAAAGATCTCAAGGACCCCAAGATGAAGCTCAAAAGTCTCATGCAATTGGAGTTGCTTGCAGCAGAGAATCAGAGGAATAAAAAGTGTTTGCTTGAGGCTGGTGTGCCAAAAGCCATGATCTTGTTCATAGTGTCTTGCTATAGAAAAGGCCAAATTGAAGAGGGTCTTGAAGAAGCTCTGAGTTTTCTTCAGTTTGTTAAGGTTCCTGCAGAGGAAGTGAGGCTGCTATTAGCTGAGAATGATCAAATAGTGTTGGATGCTCTGACATGGGTTTTAGCCTGTGAGATAAAGAAGAATTCTATGGCTGTGAAATCACATGCTGTTTTGGTGCTGAAAACAATCATCCATAGGGGTGATCCTAGTGTTCTTGAGAGGTTAAAACCTGAATTCTTTGAAAGGATTGTGAAGGTTCTTCGATGTGGGATTACACAACAAGGGATGAGTGCAGCTCTGAGGGTGTTGTTAAGTGCTTGTTCTTGGGGAAGAAACAGGATCATGATGGTGGAAGCCGGTGCTGTTTTTGAACTCATTGAGATTGAATTAGGTGCACCTGAGAAGAGAATCACAGAGCACACATTGAGTATACTGTTTCATTTGTGCTCAAGTGCAAATGGTAGAGCTCAGTTTCTGTGCCATGAGGGTTCCATTGCAGTGTTGACAGAGAGAATATTGAAGGTTTCTGCGGCAGTGGATGAAAAAGCCATATATGTTCTGTCATTGATATCAAAGTTCTCTGCCACAAAGATGGTGCTGCAAGAGATGTTAAAGGTAGGAACTGTGTCAAAGCTTTTCATGTTGCTTCAAGCTGATCATGCCAAATATTTGAAAGACAAAGCAATGGAAATACTCAAGTCTCACTCTGAGGTTTGGAAGAATTCTCCTTGCTTTATGCAAGCTAGCTTGCATAGGTGA 1218 0.4228 MDEIEIPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFSNKNTTCPVSKQPLPRDSDLTPNHTLRRLIQAWCTQNSALGIDRIPTPKPPLNKIQVLKLLKDLKDPKMKLKSLMQLELLAAENQRNKKCLLEAGVPKAMILFIVSCYRKGQIEEGLEEALSFLQFVKVPAEEVRLLLAENDQIVLDALTWVLACEIKKNSMAVKSHAVLVLKTIIHRGDPSVLERLKPEFFERIVKVLRCGITQQGMSAALRVLLSACSWGRNRIMMVEAGAVFELIEIELGAPEKRITEHTLSILFHLCSSANGRAQFLCHEGSIAVLTERILKVSAAVDEKAIYVLSLISKFSATKMVLQEMLKVGTVSKLFMLLQADHAKYLKDKAMEILKSHSEVWKNSPCFMQASLHR. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05211 405 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Seca7g05211 405 Gene3D - 96 396 IPR011989 -
Seca7g05211 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Seca7g05211 405 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca7g05211 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca7g05211 405 SUPERFAMILY RING/U-box 3 84 - -
Seca7g05211 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Seca7g05211 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca7g05211 405 SUPERFAMILY ARM repeat 98 384 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05211 Seca-Chr7 149872368 149873585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05211 2 398 U-box Gene Family AT3G11840 43.084 9.08e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05211 - - lja:Lj0g3v0014579.1 589.341