Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05210 ATGGCGACGTACTTTCATAGTAATTCAGAAATCCAAGGAGGTTCTGCTGACGGACTTCAAACTCTCATTCTCATGAACCCTGGTTACATCCAGTACTCAGACACGCCGCCACCGCAGTCACATGCCGGAAACCTCGTATTCCTCAACTCAGCCGCCGGAAACACCTCCCTTGGCCAACAAAGTCTCCCTCACGCACCGCCACAATTCGTCGGCGTGCCCCTATCCGCCGCCTCCGTGGAGCCGTCGGTGCATGCCCATCACGACGTCTCCGCCTTACAGGGCTTCCAGCCCCGCATGCAGTACAACTTATGGAACACGTTAGACCCCAACGCGGCGGCGCGTGAGGCTTCACGCGCTACTCAGGGGCTGTCGTTGAGCCTTCATGCTCAGGCTCCGGCTGTGTCCGGTGACGACGCGCGCGCGTCGGGTGGTGGGTCGTCGTCTTCTGCTTCCGGGGTTACCAATGGCGTTTCTGGGATTCAGAGTGTGCTCTTGAGTTCAAAGTATTTGAAGGCCACGCAGGAACTCTTGGACGAGGTTGTGAATGTTAACAGTGGAATTAAGGTTGAAACGGCAAAGAGGAGCTTTGACAAGATTAAGGTTGTTGGAGAATCATCAGGTGTTGCTAGTGGTGATGGTTCACTTGCTGGGGAGGGAAGTGGGAAGCGTAGCTCTGAACTATCAACCACAGAGAGACAAGAAATTCAGATGAAGAAGGCAAAACTAATCAACATGCTTGATGAGGTGGAGCAAAGGTATAGGCAATACCACAACCAGATGCAGATTGTGATATCCTCATTTGAACAAGCTGCGGGGATTGGGTCAGCAAGAACCTACACTGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGCTTGAAAGATGCAATTACAGGCCAAATTAGAGCTGCAAATAAGAGCTTAGGAGAAGAGGATTGCTTTGGAGGTAAAATTGAAGGGTCGAGGCTCAAATATGTAGACCATCACCTGAGGCAACAGAGAGCTATTCAACAGTTGGGAATGATGCAACACAATGCTTGGAGACCACAGAGAGGATTGCCTGAAAGATCTGTTTCTGTCCTACGTGCATGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCGCGAGTTAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCATGAACTGAATGGGTCAGAGGACAAATCAAGCAAGAACAGTGAGGACCCTTTGATGAAAACAACAGCTTCACAAGAGGGAGGTCCAATATCTGAAACTGAATCTAAAAGTTTCAATTCCAAACAAGATGTTGCTAAAAACCAGAACACACCAATAGTTTCAGTTTCTACACCATCAACATCACCTGTTGGGGGAAATGTGAGGAACCAATCAGGATTTAGCTTCATTGGATCATCAGAACTAGATGGAATCACACAAGGAAGTCCTAAGAAAATAAGGAACCATGAAATTCTGCACTCTCCAAATCGTGTCCCTTCAATCAACATGGATGTCAAGCCCAATGAGGCACACAATGAACAACTTACAATGAAATTTGGGGATGAAAGGCAGAGCAGAGATGGGTACTCTTTTATGGGAAACCAAACAAACTTCATTGGCGGATTTGGACAGTACCCAATGGAGGAAATTGGGAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACAATATCAGGAACACATCAAACGTTTCTTCCAAACCAGAACATTCAACTAGGAAGGAGATTGGATATGAGTGAACCAAATGAGTTTGGTGCCATAAACACTTCCACTTCTCATTCTACAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTTGCCTAA 2004 0.4691 MATYFHSNSEIQGGSADGLQTLILMNPGYIQYSDTPPPQSHAGNLVFLNSAAGNTSLGQQSLPHAPPQFVGVPLSAASVEPSVHAHHDVSALQGFQPRMQYNLWNTLDPNAAAREASRATQGLSLSLHAQAPAVSGDDARASGGGSSSSASGVTNGVSGIQSVLLSSKYLKATQELLDEVVNVNSGIKVETAKRSFDKIKVVGESSGVASGDGSLAGEGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRAIQQLGMMQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEHELNGSEDKSSKNSEDPLMKTTASQEGGPISETESKSFNSKQDVAKNQNTPIVSVSTPSTSPVGGNVRNQSGFSFIGSSELDGITQGSPKKIRNHEILHSPNRVPSINMDVKPNEAHNEQLTMKFGDERQSRDGYSFMGNQTNFIGGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTISGTHQTFLPNQNIQLGRRLDMSEPNEFGAINTSTSHSTAAFESINMQNPKRFAAQLLPDFVA. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05210 667 MobiDBLite consensus disorder prediction 134 153 - -
Seca7g05210 667 Pfam Associated with HOX 163 299 IPR006563 -
Seca7g05210 667 CDD homeodomain 348 408 IPR001356 GO:0003677
Seca7g05210 667 MobiDBLite consensus disorder prediction 419 435 - -
Seca7g05210 667 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Seca7g05210 667 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Seca7g05210 667 FunFam BEL1-like homeodomain protein 9 351 413 - -
Seca7g05210 667 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Seca7g05210 667 Gene3D - 351 429 - -
Seca7g05210 667 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 434 - -
Seca7g05210 667 MobiDBLite consensus disorder prediction 436 490 - -
Seca7g05210 667 MobiDBLite consensus disorder prediction 206 233 - -
Seca7g05210 667 SMART prehox3 158 300 IPR006563 -
Seca7g05210 667 SMART HOX_1 348 412 IPR001356 GO:0003677
Seca7g05210 667 MobiDBLite consensus disorder prediction 419 490 - -
Seca7g05210 667 Coils Coil 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05210 Seca-Chr7 149842726 149847649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05210 1 667 Homeobox Transcription Factor Family AT2G35940 50.000 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca7g05210 POX 1.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05210 - - gmx:100810851 1059.67