Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05209 ATGGATAATGAAATTGATGTTCCTCCATTCTTTCTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAGTCACTGTCTCCACAGGCATCACCTACGACAGAGAGAGCATTGAAAAATGGCTCTTTTCAGGAAAAAACAACACATGTCCTGTTACCAAACAACCCCTTCTCTCTGATTCCACTGATCTCATAACCCCAAATCACACCCTTCGCAGACTCATTCAAGCTTGGTGCACCATCAACGCTTCTCACGGCATCCAAAGGATTCCAACTCCTAAGCCTCCAGTAACAAAATCAATGATTGAAAAGCTTCTCAGAGATGCTTCTAATTCCTCTCAATTGCAGATGCAATGCCTCAGAAGCCTTAAAACCATTGCTTCTGAGAGTGAAACTAATAGAAGATGCATTGAATCTGCTGGTGCTGTTCAGTTCTTAGCATCAGTTGTAACAACCAACACCAATTCTTCTTCTTCTTTAACTGAATTAGATGATGAAGCCTTAAGCATCCTTCGTGGTCTTCATTTATCAGAAGCTGGGTTGAAGACTCTCTTTAAAAATGGAGACTTTATTGACTCTTTAACAAGAATCATGCAGAGGGGAATCTATGATTCAAGAACTTATGCAGTTTTGTTGTTGAAATCTATGTCAGAAGTGGCAGATTCTGTGCAGATAGCGAATGTAAAAGCTGAGTTGTTTCTGGAATTAGTTCAAGTTCTTAAAGACCAGATTTCACAGAAGGCTTCAAAAGCAACACTTCAAGCACTGATTCAACTTGTTCCTTGGGGGAGGAACAGGATCAAAGCAGTGGAAGCAGGGGCTGTTCCTGTTTTGGTAGAGCTTCTTCTTGATTGTAAGGATAGAAAGCCTTGTGAAATGATGATGGTTGTTTTGGAGATGTTGTGTCAGTGTGCAGATGGGCGTGCAGAGCTTTTGAGCCATGGAGCAGGGTTAGCCATAGTGTCAAAGAAGATTCTGAGGGTTTCTACCATGGCAAATGATAGAGCTGTGAGGATTCTGTTATCTGTTTCAAGATTCTCTGCAACACCAAGTGTTGTTCAAGAGATGCTGCAATTGGGTGTGGTGGCTAAGTTATGTTTGGTGCTTCAAGTGGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGAGATACTTAAATTGCATGCTCGGGCATGGAGGAATTCATCTTGCATACCTACCAATTTGCTTGCTTCATACCCAACAAGTGTGTGA 1230 0.4171 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPVTKQPLLSDSTDLITPNHTLRRLIQAWCTINASHGIQRIPTPKPPVTKSMIEKLLRDASNSSQLQMQCLRSLKTIASESETNRRCIESAGAVQFLASVVTTNTNSSSSLTELDDEALSILRGLHLSEAGLKTLFKNGDFIDSLTRIMQRGIYDSRTYAVLLLKSMSEVADSVQIANVKAELFLELVQVLKDQISQKASKATLQALIQLVPWGRNRIKAVEAGAVPVLVELLLDCKDRKPCEMMMVVLEMLCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVSRFSATPSVVQEMLQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSSCIPTNLLASYPTSV. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05209 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Seca7g05209 409 SUPERFAMILY ARM repeat 100 392 IPR016024 -
Seca7g05209 409 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Seca7g05209 409 CDD RING-Ubox_PUB 8 59 IPR045210 -
Seca7g05209 409 Gene3D - 93 396 IPR011989 -
Seca7g05209 409 PANTHER WDSAM1 PROTEIN 4 398 IPR045185 GO:0061630
Seca7g05209 409 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Seca7g05209 409 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Seca7g05209 409 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Seca7g05209 409 SUPERFAMILY RING/U-box 4 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05209 Seca-Chr7 149786050 149787330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05209 1 406 U-box Gene Family AT2G35930 60.291 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05209 - - gmx:100809123 598.971