Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05205 ATGAATGACTTATTCTCCGGCTCATTCTCTCGCTTCCGTGGCGAACAAGCCTCGCCGGATCGCCACCATGTCATCGAGATGACGGGCGCTACCACCGGCGGCGGAGTGAACCTGGACAAGTTCTTCGAGGATGTGGAGGGTGTGAAGGAGGAGCTGAAGGAGCTTGAAGGGATTGCCCAGAGGTTGCAGAGCAGCCACGAGCAGACCAAGACGGTGCATCATGCCAAGGGAGTGAGGGAACTCCGTTCCCGCATGGACGACGACGTTTCCGTTGCTCTGAAGAAGGCGAAGGTTGTGAAGCTTAAGTTGGAGGCACTGGAGCGCTCCAACGCCGCAAATCGAAACCTACCCGGGTGCGGGCCCGGGTCATCCTCGGATCGTACCCGAACCTCTGTGGTCAACGGGTTGAAGAAGAAGCTCAAGGACTCCATGGATACCTTCAACCACCTCCGCCAGCTCATCTCTTCAGAATACAGGGACACCGTCCAACGCCGTTACTTCACCGTCACTGGCGAGAACCCCGATGAAAAGACCCTAGATCGCTTGATCTCCACCGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAATCTCCAGGAATTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAATATCAAGGTGAGCAATTGGATAATATTGAGAGCCATGTGGCAAGAGCTCACTCGTTTGTGCACACTGGAGCTGAGCAGTTACAGACTGCACGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATTATACTTCTTTTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAGACCATGGGATAAAAGTGGAAGTGGTGGCAGCGGTGGTGGTAGTCAGCCTGCTCCGGTACAAACACCACCATCTCCTCCTCCTCCTCCTGCTGGTGCTTAA 1002 0.5289 MNDLFSGSFSRFRGEQASPDRHHVIEMTGATTGGGVNLDKFFEDVEGVKEELKELEGIAQRLQSSHEQTKTVHHAKGVRELRSRMDDDVSVALKKAKVVKLKLEALERSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMDTFNHLRQLISSEYRDTVQRRYFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKNLQELHQVFLDMTVLVQYQGEQLDNIESHVARAHSFVHTGAEQLQTARKHQKNTRKWTCYCIILLLVIILFVVLFTVRPWDKSGSGGSGGGSQPAPVQTPPSPPPPPAGA. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05205 333 CDD SNARE_syntaxin1-like 207 269 - -
Seca7g05205 333 MobiDBLite consensus disorder prediction 319 333 - -
Seca7g05205 333 SMART SynN_4 33 159 IPR006011 GO:0016020
Seca7g05205 333 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Seca7g05205 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Seca7g05205 333 Gene3D - 36 168 - -
Seca7g05205 333 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Seca7g05205 333 Coils Coil 208 231 - -
Seca7g05205 333 MobiDBLite consensus disorder prediction 306 333 - -
Seca7g05205 333 Coils Coil 38 65 - -
Seca7g05205 333 SMART tSNARE_6 203 270 IPR000727 -
Seca7g05205 333 SUPERFAMILY t-snare proteins 36 263 IPR010989 GO:0016020|GO:0016192
Seca7g05205 333 PANTHER SYNTAXIN 58 291 IPR045242 -
Seca7g05205 333 Pfam SNARE domain 244 296 IPR000727 -
Seca7g05205 333 Gene3D - 204 301 - -
Seca7g05205 333 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca7g05205 333 CDD SynN 38 195 IPR006011 GO:0016020
Seca7g05205 333 FunFam Syntaxin 132 201 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05205 Seca-Chr7 149711931 149713927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05205 30 327 SNARE and Associated Proteins AT3G11820 72.787 4.18e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05205 K08486 - gmx:100809258 499.975