Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05203 ATGAACGACTTGTTCTCCGGCTCCTTCTCTCGCTTCCGCAACACGGATCAAGTCTCGCCGGACAACCACCACCACGTCATCGAGATGTCGTCGACGGAGGGAGGGGTGAACCTGGACAAGTTCTTCGACGAAGTTGAGAGCGTGAAGGAGGAGCTGAAGGAACTGGAGCGTCTCCACGAGAGCTTGCGTGGGTCCCACGAAAAGAGCAAGACCCTTCACAGTGCCAAAGCCGTGAAGGAGCTTCGTTCACGCATGGATGGTGACGTGGCACTTGCTCTTAAGAAAGCTAAGGTCGTCAAGATCCGGCTCGAGGCACTGGACCGGTCCAATCAGGCGAGCCGGAGCTTGCCAGGGGCCGGACCCGGTTCGTCCTCGGACCGAACCAGGACCTCCGTGGTGGCCGGTCTGAGGAAGAAGCTGAAAGACTCCATGGATAGCTTCAACAATCTCAGACAAGAGATATCCTCTGAGTACAGGGAGACCGTACAACGCAGATACTACACTGTCACTGGAGAGAACCCTGATGATAAAACCATTGACCTTCTCATCTCTACTGGTGTGAAAGTGAAAGTTTCTTGCTGA 582 0.5481 MNDLFSGSFSRFRNTDQVSPDNHHHVIEMSSTEGGVNLDKFFDEVESVKEELKELERLHESLRGSHEKSKTLHSAKAVKELRSRMDGDVALALKKAKVVKIRLEALDRSNQASRSLPGAGPGSSSDRTRTSVVAGLRKKLKDSMDSFNNLRQEISSEYRETVQRRYYTVTGENPDDKTIDLLISTGVKVKVSC. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05203 193 Pfam Syntaxin 40 191 IPR006011 GO:0016020
Seca7g05203 193 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Seca7g05203 193 Coils Coil 133 153 - -
Seca7g05203 193 SMART SynN_4 33 159 IPR006011 GO:0016020
Seca7g05203 193 Coils Coil 38 65 - -
Seca7g05203 193 MobiDBLite consensus disorder prediction 111 130 - -
Seca7g05203 193 SUPERFAMILY t-snare proteins 38 185 IPR010989 GO:0016020|GO:0016192
Seca7g05203 193 CDD SynN 38 186 IPR006011 GO:0016020
Seca7g05203 193 Gene3D - 36 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05203 Seca-Chr7 149700339 149702094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05203 30 186 SNARE and Associated Proteins AT3G11820 76.433 1.39e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05203 K08486 - gmx:100793347 282.722