Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05199 ATGAACAACACAACTGATACCTCTGGATTCCTTGGTTCCAACAACATAAGTGGCTTTGGCTATGGCATAGGAATTTCAATTGGAATTCTCTTGCTCATTACAACCATCACACTCACTTCCTACTTCTGCACCAGGGTTCAGATGCCAACTGCTCCACCTCCTAGGAGAACCACTACCCCTGAATTCCTTGAGCCACAGCACTCAGTAATCGATGTGGGACTAGATGAAGCCACAATTCTGAGTTACCCAAAGATGCTATATTCTGAAGCCAAGCTAATTAGGAAATCTGATTCCACAGCAACATGCTGCTCTATATGTCTGGGAGATTACAAGGGCTCTGATATGCTTCGTGTGTTGCCTGATTGTGAGCATCTCTTCCACCTTAAGTGCATAGACCCTTGGTTGAGGCTGCATCCTACCTGTCCTCTCTGCAGAACATCTCCAATGCCAACACCACTCTCAACTCCTCTGGCTGAAGTTGTTCCATTAGCAAGCAGGAGAGATTAA 507 0.4576 MNNTTDTSGFLGSNNISGFGYGIGISIGILLLITTITLTSYFCTRVQMPTAPPPRRTTTPEFLEPQHSVIDVGLDEATILSYPKMLYSEAKLIRKSDSTATCCSICLGDYKGSDMLRVLPDCEHLFHLKCIDPWLRLHPTCPLCRTSPMPTPLSTPLAEVVPLASRRD. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05199 168 CDD RING-H2_EL5-like 102 145 - -
Seca7g05199 168 SMART ring_2 103 144 IPR001841 -
Seca7g05199 168 FunFam E3 ubiquitin-protein ligase ATL6 63 150 - -
Seca7g05199 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Seca7g05199 168 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Seca7g05199 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 IPR045899 -
Seca7g05199 168 Pfam Ring finger domain 103 145 IPR001841 -
Seca7g05199 168 SUPERFAMILY RING/U-box 102 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05199 Seca-Chr7 149628740 149630168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05199 6 165 C3H Transcription Factor Family AT2G35910 63.804 5.87e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05199 - - gmx:121172638 237.269