Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05183 ATGGAGGTTCCAGAGATGGAAGGCAAGACTGAGAGTCATGGGACATCAGCAGTGGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTTGAAGATTTTTGTGAAAGTGATCCTGCAAACGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAAGCTATTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAGGCAGTGGAGATGGAGAGGAGCTTGAGGACTAACCCCTCAAGAAATGCTGCAATTTTTCACCATCCCATCCTTGGTGATTTTGAATTGCAGCATTTACCTGTCGGTGTAAATGATGCTGATGTTGAACAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCTCAGCACCTTGGTCAGAGAGAAGGTCAAAGAACTAGGTCATCTGCTCGAGGCCGTCCACAGTTCTTAGTATTCTCAACTGAGCCCAGTGCACCTCCATCAGGTCCTGATTCCGCTGCTGGAGGGGGAAATGAACCAGCGGCAATTCCTGTAGGAAGTCCATCTACCCCACTTATATATGATGGAGATGAACCGACATCATCACAGCAGATCCCACATTTTCAAACTCATGGCTCTTCTTTAACTCCCGGGTCTACTGTCATGGCAACAAATCTTCAAGGAATTTACTCTGATGATAGAAGGTCTACCACACATTCTTCCCCAGCAAACCAAGATAGAGCAGGGCCGTCAGAATTCCAGTCATTATCTGATTCTCTGCGGTCCAGATGGAATGCAGTGTCCCTGAGATACAAAGAATCAATTTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAATTCTTCCATGTCAGAATTTGGTTCAGAAGTTAGAAGAGAGTTGAATGCTGGAATTGCTAGCGTGTCCCGATTGATGGAGCGCCTTGAAACCAGGGAAAACAATCAAGCTGAAGGTACTTCTTTGTCAAATCATTTGACGGGTGGTGGTTCCATCCAAGAAACGAGCAACCAGAGGAATGTGGAAGCTCATGGAGAGAACTCTTTACATGAAAATAAGACTCCAGCTACATGTTCTGCTAGCTCAGATTCAAATTGA 1161 0.4599 MEVPEMEGKTESHGTSAVAFVEGGIQEACDDACSICLEDFCESDPANVTNCKHEFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEMERSLRTNPSRNAAIFHHPILGDFELQHLPVGVNDADVEQRIIQHLAAAAAMRRAQHLGQREGQRTRSSARGRPQFLVFSTEPSAPPSGPDSAAGGGNEPAAIPVGSPSTPLIYDGDEPTSSQQIPHFQTHGSSLTPGSTVMATNLQGIYSDDRRSTTHSSPANQDRAGPSEFQSLSDSLRSRWNAVSLRYKESISKGTRGWKERLFSRNSSMSEFGSEVRRELNAGIASVSRLMERLETRENNQAEGTSLSNHLTGGGSIQETSNQRNVEAHGENSLHENKTPATCSASSDSN. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05183 386 MobiDBLite consensus disorder prediction 146 165 - -
Seca7g05183 386 MobiDBLite consensus disorder prediction 206 232 - -
Seca7g05183 386 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Seca7g05183 386 MobiDBLite consensus disorder prediction 171 232 - -
Seca7g05183 386 SUPERFAMILY RING/U-box 25 80 - -
Seca7g05183 386 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 81 - -
Seca7g05183 386 MobiDBLite consensus disorder prediction 334 386 - -
Seca7g05183 386 SMART ring_2 33 73 IPR001841 -
Seca7g05183 386 MobiDBLite consensus disorder prediction 336 364 - -
Seca7g05183 386 FunFam E3 ubiquitin-protein ligase RHF2A 4 107 - -
Seca7g05183 386 MobiDBLite consensus disorder prediction 371 386 - -
Seca7g05183 386 Coils Coil 313 333 - -
Seca7g05183 386 MobiDBLite consensus disorder prediction 244 268 - -
Seca7g05183 386 Pfam Ring finger domain 32 73 IPR001841 -
Seca7g05183 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05183 Seca-Chr7 149436470 149441225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05183 30 81 C3H Transcription Factor Family AT4G00335 46.154 4.93e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05183 K19043 - gmx:100803582 594.734