Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05173 ATGGGCAACAACTGTGTGGGACCAAACCTCGGCGGGAATGGCTTCCTTCAATCCGTTTCGGCTGCGGTGTGGAAAACCCGCGCACCGGAGGCTAGTCTTCCGCCGCCTAACGCCGACGACAAGAACAAATCTCCGGCACCAGCGAATGCGGCCAGCGATTCGTCCAATGGAGGAGGGTCGAGTGCTGCCGGCAAAGGTTCGGATGCTTCTAATAACAATCGCTCTGACGGTTCCAGAGGCGTTGATCCTGCAATGCCGGTTCAGAGCACACCGCCTGAACAGGTGAAAATAACCGCCACGGAAACAAAACCGGAGAAGCCGCAGGTAAATAACGAACCGGCATCTAGCGCTGGTGGTGGTGGTGGTGATGCAGGGAAAGCTAAGAAACCTACTCATGTGAAAAGGGTATCTAGTTTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACAGAGAATATGAAGGATTTTTACAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGGACTAACAAAGATTTTGCTTGTAAATCCATTGCAAAGAGGAAATTGACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAAATTCAGATCATGCACCACTTGGCTGGTCACCCCAATGTGATACAAATAATTGGTGCTTATGAGGATGCAGTTGCTGTCCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTATTTGACAGGATCATACAGAGGGGGCATTACACTGAGAGAAAGGCTGCTGAACTTGCGAGATTGATAGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCAGAAAATTTTCTCTTCATCAACCATGAAGAAGAATCACCACTTAAGACAATAGATTTTGGACTCTCGGTTTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGTCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGCAATATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATCTTACTCAGTGGAGTTCCCCCATTTTGGGACGAAACGGAGCAGGGAATATTTGAGCAAGTATTGAGAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCAAGCATATCTGAAAGTGCTAAGGATCTTGTTCGAAGAATGCTTATAAGGGACCCTAAGAAGCGGTTGACAGCACATGAAGTTCTTTGCCACCCTTGGGTTCAGGTTGGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTAACTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTAAAAAAAATAGCCATTCGAGTAATTGCTGAAAGTCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTAGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATTAACTGGTTAATGCAAGCGGCAGACGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCGGCAATGCTTCATCTAAACAAGATCCAGAAGGAGGATCATCTATTTGCAGCCTTCTCCTACTTTGATAAAGATGGTAGTGGATACATTACAAAGGACGAGCTCCAACAAGCCTGTGAACAGTTTGGCTTAAAAGATTATCATCTAGATGATATAATACGCGAAGTTGATCGGGATAATGTAATATATTGCATTCCAGTAGTTTACTATGATGGACGCATTGATTACAGTGAGTTTGTTGCAATGATGGAAGACACTGGTTTTGGCAGAAAGGGGTTATAA 1845 0.4531 MGNNCVGPNLGGNGFLQSVSAAVWKTRAPEASLPPPNADDKNKSPAPANAASDSSNGGGSSAAGKGSDASNNNRSDGSRGVDPAMPVQSTPPEQVKITATETKPEKPQVNNEPASSAGGGGGDAGKAKKPTHVKRVSSFGLQVESVLGRKTENMKDFYSLGRKLGQGQFGTTFLCVEKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKQYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLRGELDFVSEPWPSISESAKDLVRRMLIRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLTRLKQFSAMNKLKKIAIRVIAESLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEINWLMQAADVDNSGTIDYGEFIAAMLHLNKIQKEDHLFAAFSYFDKDGSGYITKDELQQACEQFGLKDYHLDDIIREVDRDNVIYCIPVVYYDGRIDYSEFVAMMEDTGFGRKGL. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05173 614 Pfam EF-hand domain pair 464 524 IPR002048 GO:0005509
Seca7g05173 614 Pfam EF-hand domain pair 534 604 IPR002048 GO:0005509
Seca7g05173 614 MobiDBLite consensus disorder prediction 91 115 - -
Seca7g05173 614 ProSitePatterns Protein kinases ATP-binding region signature. 164 191 IPR017441 GO:0005524
Seca7g05173 614 Gene3D - 423 607 - -
Seca7g05173 614 MobiDBLite consensus disorder prediction 47 78 - -
Seca7g05173 614 CDD STKc_CAMK 157 415 - -
Seca7g05173 614 SUPERFAMILY Protein kinase-like (PK-like) 156 417 IPR011009 -
Seca7g05173 614 ProSitePatterns EF-hand calcium-binding domain. 544 556 IPR018247 -
Seca7g05173 614 FunFam Calcium-dependent protein kinase SK5 244 428 - -
Seca7g05173 614 SUPERFAMILY EF-hand 456 604 IPR011992 -
Seca7g05173 614 ProSiteProfiles EF-hand calcium-binding domain profile. 531 566 IPR002048 GO:0005509
Seca7g05173 614 Gene3D Phosphorylase Kinase; domain 1 160 243 - -
Seca7g05173 614 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Seca7g05173 614 PANTHER SERINE/THREONINE-PROTEIN KINASE 150 582 - -
Seca7g05173 614 FunFam Calcium-dependent protein kinase 1 160 243 - -
Seca7g05173 614 ProSiteProfiles Protein kinase domain profile. 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05173 614 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Seca7g05173 614 Pfam Protein kinase domain 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05173 614 FunFam Calcium-dependent protein kinase 1 424 608 - -
Seca7g05173 614 Gene3D Transferase(Phosphotransferase) domain 1 244 420 - -
Seca7g05173 614 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Seca7g05173 614 SMART efh_1 499 527 IPR002048 GO:0005509
Seca7g05173 614 SMART efh_1 463 491 IPR002048 GO:0005509
Seca7g05173 614 SMART efh_1 535 563 IPR002048 GO:0005509
Seca7g05173 614 SMART efh_1 569 607 IPR002048 GO:0005509
Seca7g05173 614 MobiDBLite consensus disorder prediction 26 133 - -
Seca7g05173 614 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Seca7g05173 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Seca7g05173 614 CDD EFh 464 524 IPR002048 GO:0005509
Seca7g05173 614 SMART serkin_6 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05173 Seca-Chr7 149312209 149318505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05173 1 614 EF-hand Containing Proteins AT2G38910 73.258 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca7g05173 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05173 K13412 - gmx:100813232 993.416