Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05148 ATGGGAACACAACCCCAGCAAGCATGTCGGGAGGAAGAGGAGGAGGAGGAACTGCCAGGTCGAGGAGCTACAATTTCTGGTCAGTCAATGTCAATAAGTAGAAGTGTCGGGTCACCATCCAGCCGGAGCGAACAGACAATGGCAACACCAATAAATGATAACACTTTTCTTAGATTAAACCATCTTGACATACATGGTGACGATGCTGGATCACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGGAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAAAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATGGTGTTTCATCGCCTAATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGATACACAGTGGAAGGGTCTTCCTCGCACTAGTCTGAATGATATTGAAGAACTAAAGACAGAGCGTCTGGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGACCAATACATAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGGGTGTCTTTGCCTTTTATTCTTGTGCAGACACGCCCCCATGCAACTGTTGAAGCGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTCTGTGATAGACCTCAGAATGATAATGTAACACATAATCCTACAGATGGAGGTGAAGGTTCTAGCATGTCAAGCTTGTATCATGCTCAGGTTCCTACCTTAGTTTCAAACCCGCCAGTTAGCCTCCATCGTCCCCACCACTCCCTGGAATATTAA 1005 0.4388 MGTQPQQACREEEEEEELPGRGATISGQSMSISRSVGSPSSRSEQTMATPINDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNGVSSPNQQQYDEKNIRRRVYDALNVLMAMDIISKDKKDTQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEDQYIGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEAEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQNDNVTHNPTDGGEGSSMSSLYHAQVPTLVSNPPVSLHRPHHSLEY. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05148 334 SMART DP_2 181 330 IPR014889 -
Seca7g05148 334 CDD DP_DD 179 282 IPR014889 -
Seca7g05148 334 FunFam Transcription factor-like protein DPB 180 304 - -
Seca7g05148 334 Pfam Transcription factor DP 182 313 IPR014889 -
Seca7g05148 334 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Seca7g05148 334 PIRSF Txn_factor_DP 3 330 IPR015648 GO:0005667|GO:0051726
Seca7g05148 334 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Seca7g05148 334 Coils Coil 190 224 - -
Seca7g05148 334 Gene3D - 86 179 IPR036388 -
Seca7g05148 334 PANTHER TRANSCRIPTION FACTOR DP 23 314 IPR015648 GO:0005667|GO:0051726
Seca7g05148 334 MobiDBLite consensus disorder prediction 24 48 - -
Seca7g05148 334 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Seca7g05148 334 Gene3D Transcription factor DP 180 311 IPR038168 -
Seca7g05148 334 SUPERFAMILY E2F-DP heterodimerization region 180 298 IPR037241 -
Seca7g05148 334 MobiDBLite consensus disorder prediction 1 48 - -
Seca7g05148 334 MobiDBLite consensus disorder prediction 68 94 - -
Seca7g05148 334 FunFam Transcription factor-like protein DPB 86 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05148 Seca-Chr7 148895380 148900799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05148 92 290 E2F-DP Transcription Factor Family AT5G02470 54.500 2.97e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca7g05148 DP 5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05148 K04683 - gmx:100781272 546.584