Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05147 ATGACTTCCAACATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAGGAGAAATTAGCCGAAGTTTTTTCTCAATATGGCAAAGTCCTGAAAGCTGATATAGTGCTGAATAAAGCTAAAAATAGATCCAAAGGTTTTGGGTATGTGACTTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATTGACATGAATAGAAAGGCCAGGATCTACTAA 216 0.375 MTSNIFVKGLAFSTTEEKLAEVFSQYGKVLKADIVLNKAKNRSKGFGYVTFAKEEEARKAQIDMNRKARIY. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05147 71 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 2 66 - -
Seca7g05147 71 SMART rrm1_1 4 71 IPR000504 GO:0003723
Seca7g05147 71 SUPERFAMILY RNA-binding domain, RBD 3 67 IPR035979 GO:0003676
Seca7g05147 71 Gene3D - 1 69 IPR012677 -
Seca7g05147 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 71 IPR000504 GO:0003723
Seca7g05147 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 67 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05147 Seca-Chr7 148889016 148892421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05147 3 67 Eukaryotic Initiation Factors Gene Family AT1G22760 41.538 2.39e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05147 - K13195 gmx:100527061 112.464