Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05145 ATGTCGGTTTTATCTAGCATGGAGCTGCCCACAACAAATATAGACCTTGGGCATGAGAAGATTGGAAATGAGAAAGAGGGAGGACCCTTGCTCCATTGTGATCTATGTGACACAGAGTTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTCTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAAGTCTCCTGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGATTTCCTTACCCAGAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTAGAAGCTGATCCTGATGGTGAAGTGTTGGATCATCCTTTTGATATTATTTCTTATTTTGTCGATGAATTTGTAAATTCAAAGAGGAATTTGTTGAGTCAGGTTTCAGGATGGCTGCTAAGTGAGTTGAGAGAAGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGTTTTTGGTCATTAGATAGAAGAGAAAAGGTTGCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTCATTTCACTGCAGCATGAGTTTCAATTCTGCAGAAGATCTTGCAAACCATGTTGATAATTGCAACTTCAGACCTATGATCTGCCAAAATGAGGGATGCAATGCCAGATTTAGCACAGGTCAATTGAAGGAGCATGATTCAACTTGTCCTTTTAAGATAATTCCTTGTGAACAGAAGTGTACAGATAGCATTATAAGACGTGAGATGGACAGGCACTGCATAACTGTTTGTCCAATGAAACTTGTGAATTGTCCTTTCTATGCAGTGGGTTGTCAATCTGCTATTGCACAATGTTTGGTTGGAAAACATTGTTCAGATGACCTTCATTCTCACTTATTGCACATGCTTAAAGGCATCCACAGGGAAGCATCTGGTGAAGATCTCAAACGACGAGTAGAGAAAATTGTACAGGCTTCATCAAGCAGCAGGTTAGCAGAAGCCCACGATGTGAGATCTTTAAAAATTATTGTCAAAGATCTTGAAGCTAAGCTAGGGCCTTTGGAAATGAGTGACATGGAGAAAACTAGTGCGGAAACAGTTGTCAAGAGTGAAGACAGTAGCACCAAAACAAAGGGCGGTGAACAGAGCACACAAGCTCTAAATTCATCAGATAAAGCTGAAACGAGTGCTATCTTGAATAAGAATAGTGCAGAGAATGCTGTGAATAATAAAGATGGTGAGCATAAGGAAAATGGAAAGTAA 1233 0.3998 MSVLSSMELPTTNIDLGHEKIGNEKEGGPLLHCDLCDTELVHKLAQMFLPGLASACVDNTTGDPFKSPGSVAVDLRKEMIDFLTQRSESFVAESVILEADPDGEVLDHPFDIISYFVDEFVNSKRNLLSQVSGWLLSELREDKIDDFVQEMEMNGFWSLDRREKVAETLLKNVDFKNSFHCSMSFNSAEDLANHVDNCNFRPMICQNEGCNARFSTGQLKEHDSTCPFKIIPCEQKCTDSIIRREMDRHCITVCPMKLVNCPFYAVGCQSAIAQCLVGKHCSDDLHSHLLHMLKGIHREASGEDLKRRVEKIVQASSSSRLAEAHDVRSLKIIVKDLEAKLGPLEMSDMEKTSAETVVKSEDSSTKTKGGEQSTQALNSSDKAETSAILNKNSAENAVNNKDGEHKENGK. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05145 410 MobiDBLite consensus disorder prediction 367 397 - -
Seca7g05145 410 SUPERFAMILY TRAF domain-like 189 233 - -
Seca7g05145 410 MobiDBLite consensus disorder prediction 345 410 - -
Seca7g05145 410 ProSiteProfiles Zinc finger TRAF-type profile. 222 268 IPR001293 GO:0008270
Seca7g05145 410 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 403 - -
Seca7g05145 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 286 IPR013083 -
Seca7g05145 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 224 IPR013083 -
Seca7g05145 410 MobiDBLite consensus disorder prediction 352 366 - -
Seca7g05145 410 Pfam TRAF-type zinc finger 222 274 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05145 Seca-Chr7 148867475 148871743 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05145 zf-TRAF 2.2e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05145 - - gmx:100802183 636.336