Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05142 ATGCGGGGTAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACAGCCGAAGAAGGCGCAGTCCTAGCCCTAGGGGTCGTTACGGAGGCCGTGGTAGGGATTTGCCAACTAGTCTCCTGGTCCGGAACCTCCACAGAGATTGCAGGTCAGAAGACCTGCACGGTCGGTTTGGCCAATTTGGTCCTCTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAACCAAGAGGTTTTGGGTTTGTTCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGGCAAATTCTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGGGAACGTAGGAGCTCTAGGGATCGGTCATATGAATATAGGAGATCTCGTTCACCACGCTATGGACGAACATATTCCCCTAGTCCAGATTATTCACCTTCTCCACATCGAAGGCGATATTCCAGGTCAATCTCACCAAGAGACAGAAGGTATAGGAGGCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGGAGTCCTGGTTACTCTCGGTGA 597 0.4925 MRGRSYSYSPSPPRRYSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRSEDLHGRFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERRSSRDRSYEYRRSRSPRYGRTYSPSPDYSPSPHRRRYSRSISPRDRRYRRRSYSRSPYGSRSRSPGYSR. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05142 198 SUPERFAMILY RNA-binding domain, RBD 38 146 IPR035979 GO:0003676
Seca7g05142 198 Gene3D - 2 129 IPR012677 -
Seca7g05142 198 MobiDBLite consensus disorder prediction 166 185 - -
Seca7g05142 198 MobiDBLite consensus disorder prediction 1 36 - -
Seca7g05142 198 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 187 - -
Seca7g05142 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Seca7g05142 198 MobiDBLite consensus disorder prediction 119 198 - -
Seca7g05142 198 MobiDBLite consensus disorder prediction 119 145 - -
Seca7g05142 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Seca7g05142 198 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05142 Seca-Chr7 148824677 148828050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05142 38 154 Eukaryotic Initiation Factors Gene Family AT4G34110 26.496 1.90e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05142 K12900 - zof:121972082 191.43