Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g05142 | ATGCGGGGTAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACAGCCGAAGAAGGCGCAGTCCTAGCCCTAGGGGTCGTTACGGAGGCCGTGGTAGGGATTTGCCAACTAGTCTCCTGGTCCGGAACCTCCACAGAGATTGCAGGTCAGAAGACCTGCACGGTCGGTTTGGCCAATTTGGTCCTCTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAACCAAGAGGTTTTGGGTTTGTTCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGGCAAATTCTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGGGAACGTAGGAGCTCTAGGGATCGGTCATATGAATATAGGAGATCTCGTTCACCACGCTATGGACGAACATATTCCCCTAGTCCAGATTATTCACCTTCTCCACATCGAAGGCGATATTCCAGGTCAATCTCACCAAGAGACAGAAGGTATAGGAGGCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGGAGTCCTGGTTACTCTCGGTGA | 597 | 0.4925 | MRGRSYSYSPSPPRRYSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRSEDLHGRFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERRSSRDRSYEYRRSRSPRYGRTYSPSPDYSPSPHRRRYSRSISPRDRRYRRRSYSRSPYGSRSRSPGYSR. | 199 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g05142 | 198 | SUPERFAMILY | RNA-binding domain, RBD | 38 | 146 | IPR035979 | GO:0003676 | |
Seca7g05142 | 198 | Gene3D | - | 2 | 129 | IPR012677 | - | |
Seca7g05142 | 198 | MobiDBLite | consensus disorder prediction | 166 | 185 | - | - | |
Seca7g05142 | 198 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Seca7g05142 | 198 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 37 | 187 | - | - | |
Seca7g05142 | 198 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 40 | 109 | IPR000504 | GO:0003723 | |
Seca7g05142 | 198 | MobiDBLite | consensus disorder prediction | 119 | 198 | - | - | |
Seca7g05142 | 198 | MobiDBLite | consensus disorder prediction | 119 | 145 | - | - | |
Seca7g05142 | 198 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 38 | 116 | IPR000504 | GO:0003723 | |
Seca7g05142 | 198 | SMART | rrm1_1 | 39 | 112 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g05142 | Seca-Chr7 | 148824677 | 148828050 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g05142 | 38 | 154 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.496 | 1.90e-08 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g05142 | K12900 | - | zof:121972082 | 191.43 |