Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05140 ATGGCAGTGGCATCTTCACTTCGCTTGGCTTCACGTTTGACTAAACCATCACCATTTCACCTCTTCTCATTCTCATTCTCCACCACCTCACAGCCACAACAACACCCTCCTCCCATCCGAGTCGCCCTCACCGACTCAGTGGGCCGCGCCGTTTTCGCGACTCGCCCGATCCCCGCCGGTGATCTCATCCACACCGCGGAACCCGCCGTCTGCCACCCTTCTCCCTCTGTCCTCAACTCCGTCTGCTACTCCTGCCTAGCCAAGCTCCCGACTCTCTCCACACCGTTTTGCAGCCAATGTTGCCACCAACGCTCTAAGGTCCGTTGCCCAGAATATTACGATGTTGAGATGAAAGCAAATTGGATGGACTTTGATAACTATTGCCGGAACCATGGGTTGAAATATCCCTTGCTGGTAAAGCGGTTGGCTTGCATGGTCATATCAGGAGTTTCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACTCCTGAGATGATTTTAGAGATGGAAGAGGAGTTTACCTTGCTAAGGAATGCCTTCACAAAAGCACATATTGCAGATGAACATGTTGCTTTTTTAACCAAGCAATGGTACGTTAGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGAGGACTATATGGAGATCTTCTTTCTTCTGCAGTTGCATTGGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATACTTCCTTCCTTCTACAATCATGATTATCCTAATACACACATTATATGGATAGATAATGCACATGCAAAATTGAAGGCCCTCCGTGACATTGACGAAGGTGAAGAGCTCAGAATCTGCTATATTGATGCCAGCCTGGACCGTGATGCCCGACAAGAATTATTGTTTCGAGGTTTTGGTTTTCAATGTAATTGTAGTAGGTGTTTGCATGGCGATTAG 951 0.4711 MAVASSLRLASRLTKPSPFHLFSFSFSTTSQPQQHPPPIRVALTDSVGRAVFATRPIPAGDLIHTAEPAVCHPSPSVLNSVCYSCLAKLPTLSTPFCSQCCHQRSKVRCPEYYDVEMKANWMDFDNYCRNHGLKYPLLVKRLACMVISGVSRSDSLDILQPANLTPEMILEMEEEFTLLRNAFTKAHIADEHVAFLTKQWYVSVLARIRINAFRIELAGGLYGDLLSSAVALVEAEAAVGNAVYILPSFYNHDYPNTHIIWIDNAHAKLKALRDIDEGEELRICYIDASLDRDARQELLFRGFGFQCNCSRCLHGD. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05140 316 ProSiteProfiles SET domain profile. 37 286 IPR001214 GO:0005515
Seca7g05140 316 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 35 314 - -
Seca7g05140 316 CDD SET_SMYD 240 312 - -
Seca7g05140 316 Gene3D - 81 130 - -
Seca7g05140 316 Gene3D SET domain 50 312 IPR046341 -
Seca7g05140 316 Pfam SET domain 48 285 IPR001214 GO:0005515
Seca7g05140 316 Gene3D - 131 212 - -
Seca7g05140 316 SUPERFAMILY SET domain 35 310 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05140 Seca-Chr7 148809814 148814349 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g05140 SET 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05140 - - tpra:123906125 467.233