Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05136 ATGAGAACTTCATGGGCAGATTCTGCTGACAATACCAATGGTTCTTCCAATAACAATGCCTCGGCACGCCGGTCAGCATATGTTCCTCCACATCTTCGAAACCGGCCATTGTCTTCGGAGCCCCCTGCACCTGCAACATCATACTCATCTTCTTTGCAGGCTAATGACAGGGGAAATTATGGTGGTCCGGCCTCTGATCATGGTCGGCAAGGAGTTGGTTCAAATGCTCAAACTGGTGCTGGCTGGAACAGTAGAGGGCCAGGGAGGGACCGTGGGAGGCGTGAGGTGAATCCTTTTGAGAATGATGAAGCTGCAGATCAATCTTTTGGTGACACTGACCAAGAGAACACTGGCATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCCCCACCTGTGAATACATTCGCAGAAATAGATTTGGGGGAGGCAGTGAATCAAAACATACAAAGATGCAAGTATGTCAAACCAACCCCAGTTCAGAGGTATGCCATACCAATTTCTCTTGCGGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGCGGAATCATGAGAGAGCAGTATGTTCAAAGACCGCGTGTAGCACGAACTGCTTTCCCTCTGGCACTTATCCTCTCCCCTACCCGGGAGCTTTCATGCCAGATACATGATGAGGCCAGAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCCCCAATCACCCAGCAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCTGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGAAAGATAGTTGAACAGATGGACATGCCTCCCCCAGGCATGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGGGACTGGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTGATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTTATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCGTTGGAACACTGCTTATGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGCGACAGGACACAACAAGTGAGTTTGTTTTGCTAA 1329 0.4695 MRTSWADSADNTNGSSNNNASARRSAYVPPHLRNRPLSSEPPAPATSYSSSLQANDRGNYGGPASDHGRQGVGSNAQTGAGWNSRGPGRDRGRREVNPFENDEAADQSFGDTDQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEAVNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQGLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQVSLFC. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05136 442 Gene3D - 359 440 IPR027417 -
Seca7g05136 442 MobiDBLite consensus disorder prediction 40 58 - -
Seca7g05136 442 CDD DEADc_DDX3_DDX4 142 362 IPR044763 GO:0003724|GO:0005524
Seca7g05136 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 358 IPR027417 -
Seca7g05136 442 MobiDBLite consensus disorder prediction 1 24 - -
Seca7g05136 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Seca7g05136 442 MobiDBLite consensus disorder prediction 1 117 - -
Seca7g05136 442 FunFam Probable ATP-dependent RNA helicase DDX4 102 358 - -
Seca7g05136 442 Gene3D - 96 358 IPR027417 -
Seca7g05136 442 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 107 437 - -
Seca7g05136 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 437 IPR027417 -
Seca7g05136 442 MobiDBLite consensus disorder prediction 87 101 - -
Seca7g05136 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 356 IPR014001 -
Seca7g05136 442 SMART ultradead3 160 371 IPR014001 -
Seca7g05136 442 Pfam DEAD/DEAH box helicase 165 343 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05136 Seca-Chr7 148763335 148769139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05136 139 437 Eukaryotic Initiation Factors Gene Family AT3G19760 29.470 3.99e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05136 K11594 - gmx:100818326 723.005