Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05124 ATGGCTCCAGGAGGCAGTTCTTTCAAAGAAGTTCTTGAGTCTCACCAGATATTTTCAGATTATGAGACCACTAAGGCTAAATCGGAGGCTAATGGTAATAGTACATTCACAAAATCTAGGGGCGGATTGGGTGGAAAGCATGGAATTAATTCGAAGAATGGTGTCTATGACTTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGTGCCCAAATGGCCACACGTTATGTTCAAGTTGTAAGATTGCAGTGCATAACTGTTGCCCAACATGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTAGAGAAAGTGGCGGAAACGATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCCCATACTACACTAAGCTTAAACATGAGCAAAATTGTCCATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGCTCTGTGATGGGTGACATTCCAACTCTTTTGGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATTGTTTTGGAAGGCATTTCTGTTTGCATTTTGAGGCATTTTTGCTCGGCACAGCTCCAGTTTATATGGCTTTTTTACGATTTTTGGGTGATGACAATGAGGCAAGTAAATTCAAGTACAGTTTGGAAGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGTATTCGTGATAGTCATAGAAAAGTTCGTGACAGTCAAGATGGACTCATCATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGGGATAGGCAACAATTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGATTGA 930 0.4086 MAPGGSSFKEVLESHQIFSDYETTKAKSEANGNSTFTKSRGGLGGKHGINSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSSCKIAVHNCCPTCHHDLGNIRCLALEKVAETMELPCRYQNLGCHDIFPYYTKLKHEQNCPFRPYSCPYAGSECSVMGDIPTLLAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFLLGTAPVYMAFLRFLGDDNEASKFKYSLEVGANSRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQQLKLRITGRIWKED. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05124 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 308 - -
Seca7g05124 309 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Seca7g05124 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 115 IPR013083 -
Seca7g05124 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 112 - -
Seca7g05124 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Seca7g05124 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Seca7g05124 309 SUPERFAMILY TRAF domain-like 117 305 - -
Seca7g05124 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Seca7g05124 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca7g05124 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Seca7g05124 309 SUPERFAMILY RING/U-box 52 103 - -
Seca7g05124 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 302 IPR008974 GO:0005515
Seca7g05124 309 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05124 Seca-Chr7 148368761 148374093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05124 1 309 C3H Transcription Factor Family AT2G41980 80.259 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05124 K04506 - gmx:100813966 582.022