Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05120 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACCCCAAGGTGTTTGTTGGAGGATTGGCTTGTGAGACACAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTCGTGAGATCTTGGAGGTTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTATGCTTAATCCTTATTCCTTCCTTAATTCATTCATTCGTTCATTATCTTCTCTTCTCTCTATCACATCATATATATCATGTGTATATCCTCTTATGTTATGTTAAATCAAAATAA 300 0.37 MTPVNLAGQFGDTTYPKVFVGGLACETQKETMKKYFEQFREILEVVVITDKATGRSKGYGFVCLILIPSLIHSFVHYLLFSLSHHIYHVYILLCYVKSK. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05120 99 PANTHER BOULE-RELATED 6 62 - -
Seca7g05120 99 SUPERFAMILY RNA-binding domain, RBD 14 63 IPR035979 GO:0003676
Seca7g05120 99 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 62 IPR000504 GO:0003723
Seca7g05120 99 SMART rrm1_1 17 90 IPR000504 GO:0003723
Seca7g05120 99 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 62 IPR000504 GO:0003723
Seca7g05120 99 Gene3D - 16 63 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05120 Seca-Chr7 148287961 148288260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05120 12 62 C2H2 Transcription Factor Family AT2G19380 47.059 1.22e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05120 - - cill:122302324 122.094