Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g05117 | ATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGGCTCAGAGCCCTTAGCTGGTGCCATGGCCAGTGAAGCTTTGAACATGGATGATTGGATTGAGGAACCTTTTAACAGAATTAGCGAAGCAATGAGGCGTAGGGCACGACATCGGCGGCGATGGCGCCATTATCACCAACGTCATCATGCTCTTCATGATTTTCCTGAACCTCAAGTTCATGATATCCCAAGTGAAGCTTGGTGGCGCCAATTTGTCACCGCAGAAAATATGTCTTTTGAATTGAATCACTTTTTGGCTAATCCTGGCAATGGAAGTGTGCTGCAGGCTGGGGAAGGCAGTGTGACAGCTGAGGAAAGAGCAGAGGAGGTGCCAAAGGCATGTGACATTAACAACTGTGGTGTTACATTGGATGAGACATCAGAGAAGGAGAAGGATGTTGAAAAGGGCCGTGGTAGTGATGGGGGGTTTTTCGATTGCAATATTTGTTTGGACCTGGCTAAGGAGGCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTGTATATACATGGCTGCATTTGCATTCGGATTCTAAGGAATGTCCAGTTTGCAAGGGAGAAGTTACTGTTGAAAGTGTTACCCCGATATATGGTCGTGGGAACAATGCCCATGTTCCTGAGGAGAATTCCACCCTGAAAATCCCTCTCAGGCCTAATGCAAGGCATGTCTCAGAGGATTCAACTTTGAGACAAAACATTCAAAGGAATGTGTTTGCTATGCCTGTGGAAGAGATGATTCAGCGTCTTGGAAGCAGACTCGATCTTAATCAGGATTTAGTTCAGCCAAATGAGCATGACAATGCACGCGAAACAGGAGAGAGGGCTAGTTCCTTGTTGAGTAGGTCTATGGCAGCTAGGCTTCCTAGATATGTTAGGAGAGAGCATAACCTTGGTGCAGCACCCCCTGAGGATGCAGTGAGTTTAACACAGAACAGTATAGGCGGTTCTTTGGTAGGGGATAGCCGCAGGGTACAATCCCTTTTGCTTCGAAGAATGCAAGCACATAGAGGAACCTTTTCATCAACATTGAGCTCTGCTGAAAGGTTGGTTGAGGCATATTTCCATAGCAATCCGTTAGGTAGAAACCGAGAACAACCTCCTCCTGTTGAAGACAGGGATTCCTTTTCTAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCCACTTCCAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTAA | 1335 | 0.4637 | MNLDLNLGPGPGSEPLAGAMASEALNMDDWIEEPFNRISEAMRRRARHRRRWRHYHQRHHALHDFPEPQVHDIPSEAWWRQFVTAENMSFELNHFLANPGNGSVLQAGEGSVTAEERAEEVPKACDINNCGVTLDETSEKEKDVEKGRGSDGGFFDCNICLDLAKEAVVTCCGHLFCWPCVYTWLHLHSDSKECPVCKGEVTVESVTPIYGRGNNAHVPEENSTLKIPLRPNARHVSEDSTLRQNIQRNVFAMPVEEMIQRLGSRLDLNQDLVQPNEHDNARETGERASSLLSRSMAARLPRYVRREHNLGAAPPEDAVSLTQNSIGGSLVGDSRRVQSLLLRRMQAHRGTFSSTLSSAERLVEAYFHSNPLGRNREQPPPVEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSTSRRRNDASRVSDVDSGDSRAPRRRRLN. | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g05117 | 444 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
Seca7g05117 | 444 | MobiDBLite | consensus disorder prediction | 422 | 444 | - | - | |
Seca7g05117 | 444 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
Seca7g05117 | 444 | Pfam | Zinc finger, C3HC4 type (RING finger) | 157 | 197 | - | - | |
Seca7g05117 | 444 | SUPERFAMILY | RING/U-box | 154 | 210 | - | - | |
Seca7g05117 | 444 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 133 | 330 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Seca7g05117 | 444 | MobiDBLite | consensus disorder prediction | 412 | 444 | - | - | |
Seca7g05117 | 444 | CDD | RING-HC_RNF5-like | 155 | 198 | - | - | |
Seca7g05117 | 444 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 211 | IPR013083 | - | |
Seca7g05117 | 444 | SMART | ring_2 | 157 | 197 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g05117 | Seca-Chr7 | 148207598 | 148208932 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g05117 | 1 | 435 | C3H Transcription Factor Family | AT3G58030 | 47.797 | 6.59e-114 | 340 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g05117 | K10666 | - | gmx:100811099 | 562.762 |