Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05117 ATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGGCTCAGAGCCCTTAGCTGGTGCCATGGCCAGTGAAGCTTTGAACATGGATGATTGGATTGAGGAACCTTTTAACAGAATTAGCGAAGCAATGAGGCGTAGGGCACGACATCGGCGGCGATGGCGCCATTATCACCAACGTCATCATGCTCTTCATGATTTTCCTGAACCTCAAGTTCATGATATCCCAAGTGAAGCTTGGTGGCGCCAATTTGTCACCGCAGAAAATATGTCTTTTGAATTGAATCACTTTTTGGCTAATCCTGGCAATGGAAGTGTGCTGCAGGCTGGGGAAGGCAGTGTGACAGCTGAGGAAAGAGCAGAGGAGGTGCCAAAGGCATGTGACATTAACAACTGTGGTGTTACATTGGATGAGACATCAGAGAAGGAGAAGGATGTTGAAAAGGGCCGTGGTAGTGATGGGGGGTTTTTCGATTGCAATATTTGTTTGGACCTGGCTAAGGAGGCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTGTATATACATGGCTGCATTTGCATTCGGATTCTAAGGAATGTCCAGTTTGCAAGGGAGAAGTTACTGTTGAAAGTGTTACCCCGATATATGGTCGTGGGAACAATGCCCATGTTCCTGAGGAGAATTCCACCCTGAAAATCCCTCTCAGGCCTAATGCAAGGCATGTCTCAGAGGATTCAACTTTGAGACAAAACATTCAAAGGAATGTGTTTGCTATGCCTGTGGAAGAGATGATTCAGCGTCTTGGAAGCAGACTCGATCTTAATCAGGATTTAGTTCAGCCAAATGAGCATGACAATGCACGCGAAACAGGAGAGAGGGCTAGTTCCTTGTTGAGTAGGTCTATGGCAGCTAGGCTTCCTAGATATGTTAGGAGAGAGCATAACCTTGGTGCAGCACCCCCTGAGGATGCAGTGAGTTTAACACAGAACAGTATAGGCGGTTCTTTGGTAGGGGATAGCCGCAGGGTACAATCCCTTTTGCTTCGAAGAATGCAAGCACATAGAGGAACCTTTTCATCAACATTGAGCTCTGCTGAAAGGTTGGTTGAGGCATATTTCCATAGCAATCCGTTAGGTAGAAACCGAGAACAACCTCCTCCTGTTGAAGACAGGGATTCCTTTTCTAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCCACTTCCAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTAA 1335 0.4637 MNLDLNLGPGPGSEPLAGAMASEALNMDDWIEEPFNRISEAMRRRARHRRRWRHYHQRHHALHDFPEPQVHDIPSEAWWRQFVTAENMSFELNHFLANPGNGSVLQAGEGSVTAEERAEEVPKACDINNCGVTLDETSEKEKDVEKGRGSDGGFFDCNICLDLAKEAVVTCCGHLFCWPCVYTWLHLHSDSKECPVCKGEVTVESVTPIYGRGNNAHVPEENSTLKIPLRPNARHVSEDSTLRQNIQRNVFAMPVEEMIQRLGSRLDLNQDLVQPNEHDNARETGERASSLLSRSMAARLPRYVRREHNLGAAPPEDAVSLTQNSIGGSLVGDSRRVQSLLLRRMQAHRGTFSSTLSSAERLVEAYFHSNPLGRNREQPPPVEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSTSRRRNDASRVSDVDSGDSRAPRRRRLN. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05117 444 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Seca7g05117 444 MobiDBLite consensus disorder prediction 422 444 - -
Seca7g05117 444 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Seca7g05117 444 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Seca7g05117 444 SUPERFAMILY RING/U-box 154 210 - -
Seca7g05117 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 133 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca7g05117 444 MobiDBLite consensus disorder prediction 412 444 - -
Seca7g05117 444 CDD RING-HC_RNF5-like 155 198 - -
Seca7g05117 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 211 IPR013083 -
Seca7g05117 444 SMART ring_2 157 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05117 Seca-Chr7 148207598 148208932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05117 1 435 C3H Transcription Factor Family AT3G58030 47.797 6.59e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05117 K10666 - gmx:100811099 562.762