LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g05110	ATGCACTTGTCTTGGCTAGTACAATATCAATTCTTAGCAGTCATCTTCAGTATCATAGCCTATACAGAAGTTGGCTGCTTTTACTTCAATTTCCCTACCTTCCAACCACATGATGAAGCAAATTTGTTGCTAAGCAAAAACTCAAAAATATACTTAGATGCCATCCAAATAACCCCTGATATTCGTGGTGAGATAAAGAATTATTCAGGACGTGCTTTTTACAAAAAGCCATACAGACTTTGGAAGAATGACAAAATTGCTTCCTTCAACACCACTTTTGTGCTTAACATCAGCCCCCAAACATCCCCTGGTGGAGAAGGTTTGGCCTTTATCTTAACTGCAGATCCCACTCTCCCAGAAAACAGTGCAGATGCTACTACCAATGGAACTTCTCAAGCTGGAATTCTAGCAGTGGAGTTTGACACAAGAAAAAGTTCCACAGAAGATGGCCCTAACAACCATGTTGGCATCAACATAAATAGCATCTACTCTTTCAAACAGGTACCATTAATAAACACTAGGGTCAATATTTCATCAGGTATAAATGTAACTGTGAGAATTCAGTATGCCAATGATACTATATCTGTTTTTGGTTCCATGAGTGGAACTTCAGAGATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTATCTTCCTATCTTCAAGAAAAGGTTTATCTTGGTTTCTCTGCTTCAACAAGCAATTTCACAGAGCTGAACTGTGTAAGAGCATGGGAATTCAATGGTGTAGATATTGCAGATGGTAATAAAAATCTGTTATGGGTTTGGATCATGGTTCCAACTGTGATTATCATTGGTGGGTTGGTACTATATTTCTTGCTTTGGAAAAGGAAAAGAAACATGGAGAAGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTCAACACTCCTCTATGGCTCCAAAGAAGTTTCAACTAAGGGAAATAAAAAAAGCAACAGGTGGATTCAGCCCTCAAAACAAGCTTGGTGAAGGTGGATTTGGAACTGTCTATAAGGGTCTCCTAGGAAACAAGGAGGTAGCAGTGAAGAGAGTTTCCAAGAACTCACGTCAAGGGAAGCAAGAATTCATAGCTGAAGTGACAACAATTGGAAGCCTTCACCACAGAAACTTAGTGAAACTGATAGGATGGTGCTATGAGAACAGAGAACTCCTCCTTGTATATGAGTTCATGCCAAATGGAAGCCTAGACAAGTACCTATTTGGTGATAACAAAGTTGGTAATGGCCTTGGAAGGGGATATTCAACACTGAATTGGGAAACTAGACATAGTGTGATTCATGGGGTTGCACAAGCATTGGACTATCTTCACAATGGGTGTGAAAAGAGGGTCCTTCACAGAGACATTAAGGCAAGCAACATAATGTTGGACTTAGATTACAATGCTAAATTGGGAGACTTTGGACTTGCTCGTACCATTCAGAAGAGAAATGAAACTCACCACTCCACAAAGGAAATTGCAGGAACACCAGGTTATATGGCTCCAGAGACCTTTCTTACAGGAAGGGCAACAGTGGAAACTGATGTGTATGCATTTGGTGTTCTTGTGTTGGAGGTTGTGTGTGGAAAGAGGCCAGGGAATATGTATGCACAAGATGATTATAAGAACAGTCTTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGTAGAATAGTTGGTGCTATGGATGCAAAGATGAGTAAGGAGGAGGAGATTAAGGAGGAAGAAGTGGAGAGTGTGCTTGTGCTTGGGTTGGCTTGTTGCCATCCAAACCCACACCAGAGACCATCTATGAGAACTGTTTTGCAGGTTCTGAATGGAGAAGCATCTCCACCAATGGTTCCAAAGGAAAGACCTGCTTTTGTGTGGCCTGCAATGCCCCCATCATTCAAAGAAGATGAAGATAGCTCTCTTGTCCAGGGATCTCTCACTCCAATATTCACTGATATCACTGGCAGATAG	1965	0.4127	MHLSWLVQYQFLAVIFSIIAYTEVGCFYFNFPTFQPHDEANLLLSKNSKIYLDAIQITPDIRGEIKNYSGRAFYKKPYRLWKNDKIASFNTTFVLNISPQTSPGGEGLAFILTADPTLPENSADATTNGTSQAGILAVEFDTRKSSTEDGPNNHVGININSIYSFKQVPLINTRVNISSGINVTVRIQYANDTISVFGSMSGTSEMETLLVSPPLNLSSYLQEKVYLGFSASTSNFTELNCVRAWEFNGVDIADGNKNLLWVWIMVPTVIIIGGLVLYFLLWKRKRNMEKPEDAYPRIEDQIQHSSMAPKKFQLREIKKATGGFSPQNKLGEGGFGTVYKGLLGNKEVAVKRVSKNSRQGKQEFIAEVTTIGSLHHRNLVKLIGWCYENRELLLVYEFMPNGSLDKYLFGDNKVGNGLGRGYSTLNWETRHSVIHGVAQALDYLHNGCEKRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSLVYWVWELYGKGRIVGAMDAKMSKEEEIKEEEVESVLVLGLACCHPNPHQRPSMRTVLQVLNGEASPPMVPKERPAFVWPAMPPSFKEDEDSSLVQGSLTPIFTDITGR.	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g05110	654	SUPERFAMILY	Protein kinase-like (PK-like)	305	606	IPR011009	-
	Seca7g05110	654	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	248	IPR013320	-
	Seca7g05110	654	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	26	256	-	-
	Seca7g05110	654	Pfam	Legume lectin domain	29	254	IPR001220	GO:0030246
	Seca7g05110	654	FunFam	probable L-type lectin-domain containing receptor kinase S.5	399	612	-	-
	Seca7g05110	654	Gene3D	Transferase(Phosphotransferase) domain 1	399	612	-	-
	Seca7g05110	654	Gene3D	Phosphorylase Kinase; domain 1	309	398	-	-
	Seca7g05110	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Seca7g05110	654	CDD	lectin_legume_LecRK_Arcelin_ConA	27	248	IPR001220	GO:0030246
	Seca7g05110	654	ProSiteProfiles	Protein kinase domain profile.	324	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g05110	654	ProSitePatterns	Protein kinases ATP-binding region signature.	330	351	IPR017441	GO:0005524
	Seca7g05110	654	SMART	serkin_6	324	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g05110	654	Pfam	Protein kinase domain	327	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g05110	654	ProSitePatterns	Legume lectins alpha-chain signature.	221	230	IPR000985	-
	Seca7g05110	654	Gene3D	-	26	257	-	-
	Seca7g05110	654	PANTHER	-	56	616	-	-
	Seca7g05110	654	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	309	398	-	-
	Seca7g05110	654	CDD	STKc_IRAK	330	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g05110	Seca-Chr7	148086055	148088040	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g05110	29	622	Receptor kinase-like Gene Family	AT5G55830	35.559	1.11e-116	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca7g05110		Pkinase	2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g05110	-		-	gmx:100785031	1075.08