Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05106 ATGTTTTCGTGGTTGGCAAGGATAGTTTCTGCGTGCTTGAGACCGGTGAGGCGATATGCACGTATGAGCAAGGATGATGAGTTTGATAGCTCTTCCACCGTTGAAGATGCTCTCGTGTGGTACAGGGACCTCGAGAAGCACTCTTGTGGTGAGTTTTCCTTTGCAGTGGTTCAGGCCAACGAAGTTATTGAGGATCATAGCCAGGTTGAGACCGGTTCTGATGCTGTCTTTGTTGGTGTCTACGATGGCCATGGTGGTCCAGAAGCTTCCCGGTTCATCAATGATCACCTCTTCCATAATCTTATGAGAAGTTCTATGTTGAATCTCATTGCAGGGGTTGCTCAAGAAAATGGTTCTATCTCTGAAGATATTATCAGGAATGCTGTTTCTGCTACCGAGGATGGGTTTCTGACACTTGTTCGAAGGAGCTATGGAATAAAGCCTTTGATAGCAGCAATGGGTTCTTGTTGTCTTGTTGGTGTTATCTGGAAAGGGACACTATATATTGCCAATCTTGGAGACTCTCGTGCTGTAATTGGTTCTACAGGTGGATCTAACAAAATCATTGCTGAACAGTTGACCAAAGAGCACAATGCTAGCAAAGAGGAGGTTAGACGAGAACTCAGATCTTTGCATCCAGAAGATTCACAAATTGTAGTTATGAAGCATGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCGGCCGGAGTTCTCTTTCGATCCTTCATTCCCACGGTTCCACCTACCTGAACCTATTCGTCGTCCTGTGCTAACAGCAGAACCATCTATATGTTCAAGAGTTTTACAACCTAATGATAAGTTCATCATATTTGCATCTGATGGACTTTGGGAACATATGACAAATCAGGAGGCAGTTGAAATTGTTTATAACAATCCACGAACTGGGATTGCAAGAAGACTTATTAAGGCTGCTCTAAATGAAGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTTCAGAAGGTTGAAAAGGGGATTAGGCGTTTTTTCCATGATGATATCACAGTGGTTGTTATCTTCATTGACCATGAGTTGCGAGAGAAGAATGTTACAGTTCCTGAGTTGTCCATCAAAGGGTTTATTGACACGGTTGGACCATCAAATTTTAGGAGTTTCCAGGAAATGGAATGA 1185 0.4287 MFSWLARIVSACLRPVRRYARMSKDDEFDSSSTVEDALVWYRDLEKHSCGEFSFAVVQANEVIEDHSQVETGSDAVFVGVYDGHGGPEASRFINDHLFHNLMRSSMLNLIAGVAQENGSISEDIIRNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGGSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSICSRVLQPNDKFIIFASDGLWEHMTNQEAVEIVYNNPRTGIARRLIKAALNEAARKREMRYKDLQKVEKGIRRFFHDDITVVVIFIDHELREKNVTVPELSIKGFIDTVGPSNFRSFQEME. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05106 394 CDD PP2Cc 52 359 IPR001932 -
Seca7g05106 394 Pfam Protein phosphatase 2C 65 328 IPR001932 -
Seca7g05106 394 SMART PP2C_4 31 357 IPR001932 -
Seca7g05106 394 ProSiteProfiles PPM-type phosphatase domain profile. 51 359 IPR001932 -
Seca7g05106 394 Coils Coil 190 210 - -
Seca7g05106 394 Gene3D - 24 369 IPR036457 -
Seca7g05106 394 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Seca7g05106 394 PANTHER PROTEIN PHOSPHATASE 35 357 IPR015655 GO:0004722|GO:0006470
Seca7g05106 394 FunFam Probable protein phosphatase 2C 42 42 367 - -
Seca7g05106 394 SUPERFAMILY PP2C-like 57 360 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05106 Seca-Chr7 148049039 148053640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05106 1 390 PP2C-type Phosphatase Gene Family AT5G06750 69.500 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05106 K01102 - gmx:100813740 701.049