Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05094 ATGGATGTCCGTAAGCGAGGAAGGCCTGAAGCTGGCGTCTACCTTAACGGCGCCGTTAAGAAGACCAAACAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCATTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGCTGCACCTCCATCTAGAAATGTTGCCGCACCACCACCAGTCCCTAATGGGTCTGCACCAGCTGCTGCTAAAACCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCTATTGATGATCATCGTCCTATGCGACCTACAACCGCTGGTCATATGCCTGCTCGAATCGAGGCTCCTCCCGGTCCAGCTGCTAGCTTTGGTGCTAGTTCCACTGCGAAGATTAGTGTAGAAGCTTCCTTGGCTGGAGCTATCATTGGAAAGGGGGGTGTAAACTCAAAGCAGATCTGTCGGCAAACAGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGAAATATTGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAAGAGTTACTTCTGACTGTGTCAATGTCTGCCCCGCCTAAATCCACCCCAGGTGTTCCTGGTGCCCCAGCCCCAGCAGGTAGCAACTTCAAGACAAAGCTGTGTGACAATTTTGCAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGATAGGAATCTGA 885 0.4746 MDVRKRGRPEAGVYLNGAVKKTKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLKPAAPPSRNVAAPPPVPNGSAPAAAKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPMRPTTAGHMPARIEAPPGPAASFGASSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKELLLTVSMSAPPKSTPGVPGAPAPAGSNFKTKLCDNFAKGSCTFGERCHFAHGAAELRKIGI. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05094 294 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Seca7g05094 294 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Seca7g05094 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Seca7g05094 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Seca7g05094 294 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
Seca7g05094 294 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Seca7g05094 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 237 IPR036612 GO:0003723
Seca7g05094 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Seca7g05094 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Seca7g05094 294 Gene3D K Homology domain, type 1 163 258 IPR036612 GO:0003723
Seca7g05094 294 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Seca7g05094 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Seca7g05094 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Seca7g05094 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Seca7g05094 294 CDD KH-I_AtC3H36_like 170 235 - -
Seca7g05094 294 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Seca7g05094 294 Gene3D - 259 291 - -
Seca7g05094 294 Gene3D - 95 130 - -
Seca7g05094 294 SMART kh_6 166 236 IPR004087 GO:0003676
Seca7g05094 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Seca7g05094 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 148 IPR045877 GO:0003729
Seca7g05094 294 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Seca7g05094 294 Pfam KH domain 170 233 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05094 Seca-Chr7 147698862 147710707 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g05094 KH_1 3.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05094 - - pvu:PHAVU_007G259300g 524.242