Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05093 ATGTATGAGAAAAAGCTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATAATGACTATAGCATTGCTTGCGCACCTTGCTTGTGAGAAGGGGATTTGGGGCCCACATCTAATCGTGGTACCCACTAGTGTAATGCTCAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCATTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAACTTCAATTCGAAACGACGGATTCTCTTGACTGGTACACCACTACAAAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAATCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTTCGCCGATTAAAGCGAGATGTGGAAAAGCAACTCCCAATGAAACATGAGCATGTCATATACTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGCGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGCTCTTCTGTTTGCTCAATGCTTTTGCCTAGCTCCTTTTCAACTGTCGACCTAAGAGGTTTAGGTCTCATATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAATGATGAAGTGCAAGCTATTGAGACCCCTGCAACTTTAATCATGGAACGCACTGATATGGCTGACCTAGATGTAATTAGGCCTGGACTGAAATGTCAGAAAAAGGTGCAGGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATTTGGGAAGAGAGGCTAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCTACAACTCTGAGGGACCTTGTTACAATAAGGCATCCTGTATATGATATTCATCAGATGAAGGCGAACCCTGTTTCATACATGTACTCATCAAAGCTGGCTGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCTCGAGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAATGAGACAACTGTGTTTCTGCACCCATCCTACAAGCAGCAATACTCTGACATTCTGTCACCACTACTGTCACCAATCAGGCCTGCAATTGTTCGCCGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAATTGCAGGAGCTAGCAATTTTGTTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAGGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACACAACCTGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTGGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGCGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCACATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAAAAGCTTGATCCCATGGAACTATTTTCAGGTCATAGAACTCTTTCAATTAAAAACATGCCGAAGGAGAAAAACCAGAGTAATGGAGAAGTTTCTGTAACTAACGCAGATGTAGAGGCTGCATTAAAATATGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAATCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGCAAATGAGGATGATGAGCCTGCAGAATTAGGTGAATCTGTTTCCAATTTAAATAAAGAGAATGTACTAATGTCAAATGGAAGTGATCCTAAGGAAGATAGACCACCCTCTGTTGCTGCAAAAGAAGATGATGTTGACATGCTGGCTGATGTGAAACAGATGGCTGCAGCTGCAGCTGCATCTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTCTGGGATCCAATTATAGATAAAACAGCCTTAGAATCTGAAGTCAGGATTGAGGACACCGAATGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGTTGGAAGCTGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTACAGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGACAGAAAGAGGAAGCTGAAGAAGAAAATTTTGATTCTAAAAACAGGACTCAAGCAAGTGATTCGAAGCCCAAACCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGCCACAAGCTGAGCCAATGGCCATAGATGATGAGGTTGCTACTAGTATGGATTTTGTGTCTCCAAATTCAACTATCCAGAAAAAACGTAAGAAGTCTAAATTAACAATTGATGGTGAAGAAACGAGACTTAAGAAATCCAAAAAATCCAAGAGGGATCCTCCTGACATTTATGCTTCAGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATTAAGGCCATGTGAAAGTCTGGTTGACTTGGAACAGAAAACTGCTAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGATCCTGACGATAAAATCAGAAAAATTGAAGAAGGGAAGTCTTTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAATTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGCCTGCTGGCGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGTTGTGAGAGGTTCAGAGAACTATTCCAAAAATATGTCTTGTTCTCGATGGATAATTCAAATCATGAGAAGATCAATAATGCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGTAAATAGAGAATTACTACTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGTCTGGAAAGTGGCATCACATGTCGACCGCAGGCAAAATCCATCTCCTACCTGTAACAGTCTCTATTTTGATCAGAGTTTCTTCACTTCCATTGGCCAGCATTCACAAAATTCCCTGAACAAACCCTCTGAAAGGATGACGTTTACTAATTTGGCCCAGAGCAAGAAGTTATTAGCAGCTGCACTTGATGACACCAGAAGTAGGCAGGAGAATGACAAAATTTTCCTCCCTAACCAGGGAGAAGACATGCCAGTGAGTACAGATCAGCTGGATATAACTCTGGAGTTCCAGAAAGAGGAGAGTGATTCCTTATCTTCATTACCATCTGTTATAAATTTATCAATATATGGGACTGAAGCACTACCATCTTTAAATAAGCAAACAGGAGAAGATGATCATCTTAAAGTTTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCAATAAATGATGCAAGGTCTCGACCTGGATCCAGGATACAATCTTCTGCAAAGCAAAAGTCCATTTCTGACATTACTAAGCCGTCTAGGTCTAAGTCCAAAAGAGCTTCAGTGGATCCTAGTGAAATGCATCATCATCAGGCTGAGCCATTATTCCAGTCAATGTCACCACTTAAGGATCTGAGATTTGATCTCACTTCATGTACTATGGACGAATTTGGAATTGATACGGGTAGCAATCTTCCGTTTGAATTGAATGGGGAAAGTTCATTGGAAATGGAAAATTTAGAAGTGCTCCCACATGATTATGTAGCTGGTTTGATCTCAGGCCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTAGATAG 4554 0.4093 MYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSMLLPSSFSTVDLRGLGLIFTHLDYSMTSWENDEVQAIETPATLIMERTDMADLDVIRPGLKCQKKVQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIHQMKANPVSYMYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSKNETTVFLHPSYKQQYSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQSNGEVSVTNADVEAALKYVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYANEDDEPAELGESVSNLNKENVLMSNGSDPKEDRPPSVAAKEDDVDMLADVKQMAAAAAASGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEELEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEARQKEEAEEENFDSKNRTQASDSKPKPKKKPKKAKFKSLKKGSLTSGLRPVKEEPQAEPMAIDDEVATSMDFVSPNSTIQKKRKKSKLTIDGEETRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAELRPCESLVDLEQKTASRSKMGGKISITPMPVKRILTIKSEKLKKGSLWSKDCIPSADFWLPQEDAILCAIVHEYGPNWSLVSETLYGMPAGGAYRGRYRHPVHCCERFRELFQKYVLFSMDNSNHEKINNAGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRQNPSPTCNSLYFDQSFFTSIGQHSQNSLNKPSERMTFTNLAQSKKLLAAALDDTRSRQENDKIFLPNQGEDMPVSTDQLDITLEFQKEESDSLSSLPSVINLSIYGTEALPSLNKQTGEDDHLKVCFSAAENRFREAARACEEDSSGWASSAFPINDARSRPGSRIQSSAKQKSISDITKPSRSKSKRASVDPSEMHHHQAEPLFQSMSPLKDLRFDLTSCTMDEFGIDTGSNLPFELNGESSLEMENLEVLPHDYVAGLISGLDDCTAFPEYTDIR. 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05093 1517 Coils Coil 745 765 - -
Seca7g05093 1517 ProSiteProfiles Myb-like domain profile. 1116 1169 IPR001005 -
Seca7g05093 1517 Gene3D - 1112 1173 - -
Seca7g05093 1517 Gene3D - 233 312 - -
Seca7g05093 1517 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 499 748 - -
Seca7g05093 1517 Coils Coil 868 888 - -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 930 954 - -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 1418 1439 - -
Seca7g05093 1517 SMART helicmild6 558 641 IPR001650 -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 930 1046 - -
Seca7g05093 1517 Pfam SNF2-related domain 5 276 IPR000330 GO:0005524|GO:0140658
Seca7g05093 1517 CDD SF2_C_SNF 517 652 - -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 1013 1040 - -
Seca7g05093 1517 Gene3D - 1 232 IPR038718 -
Seca7g05093 1517 SMART ultradead3 1 176 IPR014001 -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 788 807 - -
Seca7g05093 1517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 164 IPR014001 -
Seca7g05093 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 709 IPR027417 -
Seca7g05093 1517 SUPERFAMILY Homeodomain-like 1114 1171 IPR009057 -
Seca7g05093 1517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 682 IPR001650 -
Seca7g05093 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 209 IPR027417 -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 1401 1417 - -
Seca7g05093 1517 PANTHER HELICASE SRCAP-RELATED 1 1420 - -
Seca7g05093 1517 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 233 298 - -
Seca7g05093 1517 Coils Coil 919 939 - -
Seca7g05093 1517 FunFam Photoperiod independent early flowering protein 1112 1173 - -
Seca7g05093 1517 Pfam Helicase conserved C-terminal domain 533 641 IPR001650 -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 1391 1442 - -
Seca7g05093 1517 CDD DEXQc_SRCAP 1 209 - -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 763 777 - -
Seca7g05093 1517 FunFam Photoperiod-independent early flowering 1 1 232 - -
Seca7g05093 1517 MobiDBLite consensus disorder prediction 761 783 - -
Seca7g05093 1517 Gene3D - 499 747 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05093 Seca-Chr7 147661547 147669722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05093 503 671 RAD5 or RAD16-like Gene Family AT5G43530 31.667 7.73e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g05093 SNF2_N 1.8e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05093 K11661 - gmx:100794898 2579.28