Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05080 ATGAATGAGAACAAGATTGATTGTCTAGGACGGATTCAACAAAGCCATGGACTAAATGGTGATTTCAATTCAGAGTTTGGTAATTGTTCTTCTCAATATTTTGATATCAAACAGGCTTCCAATATGGGAACTTGCAATCAACCATTTGTCATGTCCTGTGGTGGAGGAGGAGTGGAACAGCCACCATACATAGGCCAAGGAAAATCATCTAGCACCATTATCAGCCGTTTTGAGTCACCAGCTACTGCCTTTTATGCAACAGAAATCTGCATGGGTTTCCCACAATATGATTGCCAACAAGTTGGTAATCCCTCTTTGGCATCTCAATTTTCTAAGATTAATGATTTGGAATTCCCTTTGTATCAATGTCCCAGGGATAACCTTTTCCTGGATTCAGCAAACCAACCTGGCCCCAACTTTGAGTTGTCAAATCCTTTGCAAGCAATACTGAAACCCCAATTGAATAGTGATCAATGTTGTAGATCTCCTGAAAAAACTAATAAAATCCCATGTGGGAATTTTCCTGACAGCAATTTTCTTCCATTTGAACAACATAAGTTGTTCAATGATGCTGCTGCCTCAATTAGTAGGAATCCATCCCTTCCTTCTAAAGGAAATCAGGATCACACAGTTTCTTGTGGTTCATATAATTTACCTGTTTCACAGCTCAGCTTCTCTTCTCAGCAAGAGAAGCTGTCTCCAGCATTCTCTGCAGGAAATGTGTCAACTACTTCTGGAAACCCTGCTTCTAATGGTTCCTCAGTCTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAAAGTCATTTGCAGAAATACAGAATTGCGAAATACATGCCAGAGTCAACTCAGGGGAAATCTGACAAAAGAACCCATGTAGAGAATGTGCAACTTGATGTCAAAACTGGCTTACAAATTAGAGAGGCACTTCAGCTGCAGCTAGATGTTCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAGTTGCAGTTGCGGATTGAGGAACAAGGTAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAAGTAATGACCTCTTGAATACTCAGAATTTGAGCAATACAGCCAATAGTGATAAACCAAATAGTCCTAAAGATGTTGAGGATTCCATTTCTGAAGGGTCTGGAAAATCCTTATTCCATTCCAAGATAAGTTAG 1296 0.4035 MNENKIDCLGRIQQSHGLNGDFNSEFGNCSSQYFDIKQASNMGTCNQPFVMSCGGGGVEQPPYIGQGKSSSTIISRFESPATAFYATEICMGFPQYDCQQVGNPSLASQFSKINDLEFPLYQCPRDNLFLDSANQPGPNFELSNPLQAILKPQLNSDQCCRSPEKTNKIPCGNFPDSNFLPFEQHKLFNDAAASISRNPSLPSKGNQDHTVSCGSYNLPVSQLSFSSQQEKLSPAFSAGNVSTTSGNPASNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPESTQGKSDKRTHVENVQLDVKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSNDLLNTQNLSNTANSDKPNSPKDVEDSISEGSGKSLFHSKIS. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05080 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 240 403 IPR044848 GO:0003700
Seca7g05080 431 MobiDBLite consensus disorder prediction 390 407 - -
Seca7g05080 431 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
Seca7g05080 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Seca7g05080 431 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Seca7g05080 431 FunFam Myb family transcription factor 257 315 - -
Seca7g05080 431 Coils Coil 344 364 - -
Seca7g05080 431 Gene3D - 257 316 - -
Seca7g05080 431 MobiDBLite consensus disorder prediction 236 258 - -
Seca7g05080 431 MobiDBLite consensus disorder prediction 390 431 - -
Seca7g05080 431 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Seca7g05080 431 Pfam MYB-CC type transfactor, LHEQLE motif 341 388 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05080 Seca-Chr7 147402417 147406318 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05080 241 385 G2-like Transcription Factor Family AT4G28610 60.135 7.51e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca7g05080 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05080 - - gmx:100780919 634.409