Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05075 ATGTATCTAAATAACAACATAACCAAGTTTGGTGAATCTGCACTACAGCAAAGCTTTGAGCCCATCAAATCACCCTGCATCACCATCACTCCTTTGCAAACAACAGCAACCGTTGATGTTCAAACTCAGCAACACAATCAGAATCAGATTGACCTTCCTGTTTGGAGCATTGAGTTTCCAATGACAACAACAGACTCTTCATTTTTGTATTTCCAAGCCTCTGAAGATAACTACTCTGCTAGTACCACCAAACAAGATCACCTTACCTCCTCTCAATTCACAAGCTCCTTCCAATCGGTTGCAGAGTCTTTCATGTCTAGCAGTGAAGATAGAATTTCTTCTTCTGAAAAGTATAGTGAATTTCCTTCCTGTTCTGGAAAATTTGATGGTTTTCTGTCTGACAATACACCAATTTATGAGCACTTTGCACAAGAACATCAGAGCATGCTGGAGGATGATGCTTCCCCAGATAAGAGGTCCCTTGAAATTTCCTTTCAGAGAACTCAGTGTGATTTATGCACAGAGCCAGACAAGCAGTCTTCACCTTGTGGAGTTGCTTTTGAAACAACTAGCAACTGTGATTCCAGGGGAACAGCAACTCGTAAAAGAAGAATAAGATGGACAAAAGAACTGCATGAGCCATTTATTAAGATTGTTAACCACCTTGGTGGCCCAGAAAAGGCAAAGCCTAAGGCTATACTAGAGATGATGGGTTCGGATGTGCTGACCATTTCACAAGTTAAAAGTCATTTGCAGAAATATCGATCTTCATCACTTATGCACAAAGCTCTGAAAGGTAGATCCGATGAAGAACATAAAAAAGACGGGATTACTGAGCTTCAAGTCCAAATGTAA 855 0.4047 MYLNNNITKFGESALQQSFEPIKSPCITITPLQTTATVDVQTQQHNQNQIDLPVWSIEFPMTTTDSSFLYFQASEDNYSASTTKQDHLTSSQFTSSFQSVAESFMSSSEDRISSSEKYSEFPSCSGKFDGFLSDNTPIYEHFAQEHQSMLEDDASPDKRSLEISFQRTQCDLCTEPDKQSSPCGVAFETTSNCDSRGTATRKRRIRWTKELHEPFIKIVNHLGGPEKAKPKAILEMMGSDVLTISQVKSHLQKYRSSSLMHKALKGRSDEEHKKDGITELQVQM. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05075 284 Gene3D - 201 258 - -
Seca7g05075 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 182 269 IPR044848 GO:0003700
Seca7g05075 284 Pfam Myb-like DNA-binding domain 206 255 IPR001005 -
Seca7g05075 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 256 IPR006447 GO:0003677
Seca7g05075 284 MobiDBLite consensus disorder prediction 263 284 - -
Seca7g05075 284 FunFam Two-component response regulator 198 261 - -
Seca7g05075 284 MobiDBLite consensus disorder prediction 263 278 - -
Seca7g05075 284 SUPERFAMILY Homeodomain-like 200 256 IPR009057 -
Seca7g05075 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 259 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05075 Seca-Chr7 147274889 147278828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05075 199 266 G2-like Transcription Factor Family AT5G06800 57.353 1.74e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca7g05075 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05075 - - psat:127115590 236.113