Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05074 ATGGGTTCTGGCTCTGTTACCAAACCACCACCACCACCACCCTCTTCCTCCTCGCCGCCCAACTCTTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGTAAAAAAATATACTTTGAAGCAGCTCAGGCCAAACCAAGTGGTGGGGCCTCTTCATCTTCTTCTTCATCCATAGGGCCAAAGAAGGGAAGGGGTGGTGCTGTTCAGGGAGCTCAGCCTCCTAGGTGTCAGGTTGAGGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCATTCGAAATCTCCTACTGTCGTTGTCGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGATCCTCTTTGATAGTCCTTGCCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGCTGCCGAAGGCGCCTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCAAGCTCCTTATTAGCCTCACGTTATGCCAGACTTTCTTCACCTATTTTTGAAAACAATGGCAGAGGTGGTGGTTTTATGATGGAATTTGCTCCATACCCAAAGCTTACTCTGAGAAATGCATCACCAACTCCCAGATCATCTGAGCCTGTTCCAGATAACCACACTACAACACTTACCTGGCAGGCCAATTCACAGACACCATCTGACTTTTTCCTGCAGGACTCAGTGGGTGGGACAAGCTTCCTTGGTCCCAGACATCATCCTCCAGTGGAAAGTTACACTGAAGTTGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAACACCAAGTGGTGAGCTGAATAACTTGTTGAATTTCAATGGGACACTCATGACACAACTTGCTGCATCTTCTCCAGTTGCAGCCATCCATCAACTTCCAAATGCCTCATGGTATTTCAAAGGTGTTGGTTCTGATAATTGTTCACCCGAGATTGTCCCTGATCTCGGTCTGGGTCAGATTTCACAGTCTCTTCATAGCCATCCTCCTGGTGAGCTTGATGTGTCACAGCAGAACAGGAGGCATTACATGGATATGGGGCAGTCCAGGGCCTGTGAGTCTCCTCACTGGTCACATTAA 1122 0.4795 MGSGSVTKPPPPPPSSSSPPNSSTESLDGLKFGKKIYFEAAQAKPSGGASSSSSSSIGPKKGRGGAVQGAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVVVAGLEQRFCQQCSRSSLIVLARFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLASRYARLSSPIFENNGRGGGFMMEFAPYPKLTLRNASPTPRSSEPVPDNHTTTLTWQANSQTPSDFFLQDSVGGTSFLGPRHHPPVESYTEVADSSCALSLLSSQTWGSRNTTPSGELNNLLNFNGTLMTQLAASSPVAAIHQLPNASWYFKGVGSDNCSPEIVPDLGLGQISQSLHSHPPGELDVSQQNRRHYMDMGQSRACESPHWSH. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05074 373 Gene3D - 65 144 IPR036893 GO:0003677|GO:0005634
Seca7g05074 373 MobiDBLite consensus disorder prediction 45 59 - -
Seca7g05074 373 MobiDBLite consensus disorder prediction 43 73 - -
Seca7g05074 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 329 IPR044817 GO:0003677
Seca7g05074 373 SUPERFAMILY SBT domain 73 162 IPR036893 GO:0003677|GO:0005634
Seca7g05074 373 ProSiteProfiles Zinc finger SBP-type profile. 72 157 IPR004333 GO:0003677
Seca7g05074 373 Pfam SBP domain 75 156 IPR004333 GO:0003677
Seca7g05074 373 MobiDBLite consensus disorder prediction 1 28 - -
Seca7g05074 373 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05074 Seca-Chr7 147260783 147265037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05074 30 368 SBP-box Gene Family AT2G42200 42.149 4.34e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca7g05074 SBP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05074 - - gmx:100807165 489.96