LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g05061	ATGGATATGCAAGTTGATTTCATTCCAGATAATATACCGGTAACACATTTTGACTCTCTTGATGACATGCCACAATCTACTGTTGTTGATGAACCCCATGTCGAGCCTTATGTTGGGATGGAATTCAATTCATTAGAAGAAGTTGTAGGATTTTATAATTCATTTGCAAAGGCAAAATGGTTTGGGATTCGTACTCGCTCTAGTAAAAAGAATTATTGCATTTCGGTATGTGTTAGGGAAGGTGAACGTCCGGTGAAAAGTGATAAAAATGAAAAGGATAATGGCATCATGAGAGGAGTTAAGAGAAAATGCTCAACCATGAGCATGAGATGTCAAGCGTCAATTACTGTGTCAAAGGATGAGAAACGAGATAAATGGGTTATAAAATCTTTTGATAATAATCACAATCATGTCATGGCTAGTCCTAAGAGTGTGTCTTATTTAAGAAAGAAGTTTCCTGAAAAGCTTGCACGTATATATCACAAAAATTCAATATTCAAGCGTGAGCTGAAGAGGTGCATTCGAGAATCTCCAACCATTAAAGATTTTGAAGATGATTGGCAACGTATAACGGAGGTGTATAATTTGCAGAACAATGAATGGCTTCAGAGATTGTTTGAAATTAGGGAATCATGGATACTGGTCTATAATCGAAGCACGTTTTTTGGTGGTATGAATACTACACAAAGAAGTGAGAGTATCAATTCATTTTTTGACTCATTTGTTGATGCAAGCACAACACTTCAAGACTTTGTGGTAAAGTATGAGAAGGCAATAAATAATCGATCAGAAGATGCATATAAGTTTATTGTAGGAGAATTTGATCGCGTTTATGAGATAGCCTCTACAATCGGAACAGAAATGTCAAATCTCAATGAAGCTCCTTTAGAGCCAAACAATCAGAATTTTATGTCTGACACAAATTATGATGATTCAAGTTTCAATATCAAGAATCCACATATATCAGACAAAAGGTAG	978	0.3538	MDMQVDFIPDNIPVTHFDSLDDMPQSTVVDEPHVEPYVGMEFNSLEEVVGFYNSFAKAKWFGIRTRSSKKNYCISVCVREGERPVKSDKNEKDNGIMRGVKRKCSTMSMRCQASITVSKDEKRDKWVIKSFDNNHNHVMASPKSVSYLRKKFPEKLARIYHKNSIFKRELKRCIRESPTIKDFEDDWQRITEVYNLQNNEWLQRLFEIRESWILVYNRSTFFGGMNTTQRSESINSFFDSFVDASTTLQDFVVKYEKAINNRSEDAYKFIVGEFDRVYEIASTIGTEMSNLNEAPLEPNNQNFMSDTNYDDSSFNIKNPHISDKR.	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g05061	325	Pfam	FAR1 DNA-binding domain	51	139	IPR004330	-
	Seca7g05061	325	MobiDBLite	consensus disorder prediction	291	325	-	-
	Seca7g05061	325	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	24	149	IPR031052	GO:0006355
	Seca7g05061	325	MobiDBLite	consensus disorder prediction	291	316	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g05061	Seca-Chr7	146998629	147000663	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca7g05061		FAR1	6.6e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g05061	-		-	mtr:112420966	179.104