Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05051 ATGGATTCCAATACCCATCAGGGTTATCAACTCCAACAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGCTCTGCACCAAGTTCATTTCTTGCAAATCTCACACCTTGTTCTGCTCTCAACAAGAGTAGCCACCTCTGGGAGGGTTCTGAATCTGAGAGATTTGTTTCGAGATTTGTGGGTTACGGTGCTGATAGCAGCAACGACACTACTGCTGCTGCTGCTGCTGCTTCTTCTAGCTTCCAAGAGTTGGAAGAGAATAAGCCTTCTTCTAAGGCTCTGAGTGGCATGAATTCCCAGCAACAGGGCTATGGTGGTGGGTTGCCACCTCACTATCCTCTGAGGCATGGTTCTGCTGCTACTTCCAGTTCTGCTATGGATGGTTCATTTGGGTTGGTGGGTTCAATGGGAATGAATCATGAAGCACCCCACAAGAGCTTTGGTTCCCATCTTCTCAGGCAGGGTAGTTCCCCTGCTAGCCTTTTCTCCAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGCTGTGAATGGCAGTAATGATGAAATTAGTCCATCTATTAATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAACTGCTTCTTCTTTGGGGATGTTGTCACAGATCTCTGAAATAGGGAGTGAGGATATTGAGACTACTAGCCCTGACGATGTGGGGCAGGGAAGTAGCAATGATGATGCTCAACAATTTGGCCATGGATTCCCCTATGGTTCTTGGAATGATGCTACACAACTCTCAGAGAATCTCAGTGTCTTGAAAAGAGGAAGAAGTGGTAATGAACAGATGTTTTCAGATGTTCAGAATGGAGATCTAGGAAATCAAGTTCACACATTATCTCATCACTTGAGTTTACCAAAATCTTCAGCAGAGATGGTTGCTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACACGGATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACTAATACAGCAGACATGTTGGACTTGGCGGTTGAATACATTAAAGATCTTCAAAAACAATTCAAGAGTCTAAGTGAAAAACGAGCAAACTGCAAATGTATAAGCATGCAGAAGGCAGATACAAATTAA 1221 0.4373 MDSNTHQGYQLQQQNQPNSGLLRFRSAPSSFLANLTPCSALNKSSHLWEGSESERFVSRFVGYGADSSNDTTAAAAAASSSFQELEENKPSSKALSGMNSQQQGYGGGLPPHYPLRHGSAATSSSAMDGSFGLVGSMGMNHEAPHKSFGSHLLRQGSSPASLFSNNISFQNGFATMKGVGNYGAVNGSNDEISPSINRLKSQISFSSRTASSLGMLSQISEIGSEDIETTSPDDVGQGSSNDDAQQFGHGFPYGSWNDATQLSENLSVLKRGRSGNEQMFSDVQNGDLGNQVHTLSHHLSLPKSSAEMVAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKSLSEKRANCKCISMQKADTN. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05051 406 MobiDBLite consensus disorder prediction 85 106 - -
Seca7g05051 406 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 401 - -
Seca7g05051 406 MobiDBLite consensus disorder prediction 223 250 - -
Seca7g05051 406 Gene3D - 332 403 IPR036638 GO:0046983
Seca7g05051 406 MobiDBLite consensus disorder prediction 85 121 - -
Seca7g05051 406 FunFam Transcription factor bHLH130 family 332 401 - -
Seca7g05051 406 SMART finulus 337 387 IPR011598 GO:0046983
Seca7g05051 406 MobiDBLite consensus disorder prediction 223 246 - -
Seca7g05051 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 381 IPR011598 GO:0046983
Seca7g05051 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 396 IPR036638 GO:0046983
Seca7g05051 406 MobiDBLite consensus disorder prediction 1 23 - -
Seca7g05051 406 CDD bHLH_AtbHLH_like 336 389 IPR045239 -
Seca7g05051 406 Pfam Helix-loop-helix DNA-binding domain 336 382 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05051 Seca-Chr7 146697813 146701193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05051 1 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.407 1.41e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g05051 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05051 - - gmx:100819605 550.051