Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05046 ATGGAGAATAACAAGATGGTAGACTATGAGGTGATAGAACAACTTGGAAGAGGAACATTGGGTGCAACTTTTCTTGTTCTCCACAAAGCTGAGAGAAAGAGGTATGTGCTGAAGAAGATTCGCTTGGCTAAGCAAACAGAGAAGTCTAAACTGACAGCGCACCAAGAGATGGACCTGATAGCAAAACTAAATTACCCTTATATTGTGGAGTTTAAAGATGCTTGGGTGGAGAAGGATGACTACATGTGCATTATAACTGGCTATTGCGAAGGAGGTGACATGGCTGCGAATATAAAGAAAGCTCGGGGATCTTTTTTTTCAGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCTGTGGACTACCTGCACTCCAATCGTGTGCTCCACAGAGATCTTAAGTGCTCCAACATATTCCTCACTAAAGAAAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGATGACCTTTCTTCCTCGGTTGTCAGAACTCCAAACTACATGTGTCCTGAGATCCTTGCTGATATGCCTTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCCGCTTTTCGTGCTCCGGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCACTGCCAATTGTTTACTCTTCGACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACTGCAGCTGAATTGTTAAGGCATTCTCATTTACAACCTTTTGTTCTCCGCTGTCGTAATGCATCATCTGTTTTTCTACCAGTACATCTGATTAGTAGCCCAAAGGATAAAACTAAAAGATCTAACAATGGTGACAAAGACCATAGGGACAAAGAAGCAGGATTAATGAATCATTTGGAGCGTGTTTATCCAATTCAGGGAAATGGAGATGTACAAACAAGCAACCGGCATAGTGATGGCAAACTTGCAGTGTCAACCAGCATAGAAGAGCGCCTTGAGACGAAAATGGTTGATCCTACCAGCTACACTATGGAATTCTCTACTAGTATTAGTGGCTCAAAAGATGAGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAAGTAGAGCTGCAAGGGACACAGTTGACAGTGAGATCACTTCAAAGAGTACACCAGATTCCATGCATGAAAAACAAGTGTTTGCTGCTGAACATTTTCAGAAGTCATATGCGATTGACATAAATGCAGTGACTAAGAAAGTTGAAGATACTTTTTCCAATGAAGGTTTTGATAAAGCTAAAGCACGGAAGGAAGATGCCAAACCTGAAGACTCCAGTAAATCAATAGTGTCCAGTGAAGACAGTAATGGAAATGATAAAGATGGATCCACTGATGAGGTCACATCAAAAAGTACACCAGATTCTGTGCATGTTGAGCAAGGATTTACTGCTGAACATTTTCAGAAGGCTGATGCAATTGACATAAATGCAGTAACTACAAAAGTTAAATATAAATTTTCCAATGTGGCTTTTGATAAAGCTGAGGCACAGAGGGAAGATGCCAAATATGAGGACTCCAGTAAATCAATTATTTCCAGTGAAGACAGCAATGGAAATGATAAAGATGGGTCCATTGATGAGATCATGTCAAAGAGGACACTGGATTCTGTGCATGAAGAACAAGGATTTTCTGCTGAACATTTTCAGAAGTCAGATGCAATTGAAATAAATTCTGTCAATACAAAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGATAAAGCTGAAACACAGAGAGAAGATGCCAGACCTGAGGACTCCATTGAAGACAGCAATGGCAATGATAAAGATGGGTCCATTGATGAGATCATATCAAAGAGCACACTAGATTCTGTGCATGAAGAAGTAGAACAAGGATTTTCTGCTGAACATTTTCAGAAGCCGGATGTATTGGACATAAATGCAGTGACTACAGAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGAAAAAGCTGAAGCAGATGGAGAAGATGCCGAACCTGAGGCGTCCAGTAAATCAATAATGTCCAGTGAAGACAGCAATTGCAATGATAAAGATGGGTCCATTGATGAGATCACATCAAAGAGCACACTAGATTCTGTGCATGAAAAACAAGGATTTGCTGCTGAACATTTTCAGAAGCCAGATGTGTTTGACATAAATGCAGTGAGTACAAAAGTTGAAGGTGCTTTTCCCAATGAAGGTTTTGATAAAGTTGAAGTACAGGGAGAAGATGCCGAACCTGAGGATTCCAGTAAACCAATAATGTCCAGTGAAGACAGCAGAAGCAATGATAAAGATGGGTCCATTGATGCAGAAAAGCCATCACCAATTGTACATCCTGTTAGGGTTGAACATGACACTGAAACTGAAAGCTGCTTAAAGGAAAGTGAAAACCCTGAAGCATTCACAGAAGGCTTATTACAGTCACACAAGGACAACTTGACTTCTGAAAGTAATGATACACTTCCAGGTAAGGATGAAGGCACAGAAAACACACACATAATCAGTTGTTCCACAAATAAAGATGGTAATGCCATTGTGGTTGATAAGACACCAAATGGCATGTCATCAAGTACACATATTTCAGTAGGTGGTGATAAAACAAAGAGGGTGTTGGGTGATTCCTGCCAACAAAGAGCTGATGCTCTGGAATCCTTGCTTGAATTATGTGCTCATCTACTTAAACAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAAAGCCTCATCTCCTCACAAAAATTTAATCAGGAAACCTAG 2895 0.4021 MENNKMVDYEVIEQLGRGTLGATFLVLHKAERKRYVLKKIRLAKQTEKSKLTAHQEMDLIAKLNYPYIVEFKDAWVEKDDYMCIITGYCEGGDMAANIKKARGSFFSEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDLSSSVVRTPNYMCPEILADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHSHLQPFVLRCRNASSVFLPVHLISSPKDKTKRSNNGDKDHRDKEAGLMNHLERVYPIQGNGDVQTSNRHSDGKLAVSTSIEERLETKMVDPTSYTMEFSTSISGSKDESTTSESTICSVCKEADFKSRAARDTVDSEITSKSTPDSMHEKQVFAAEHFQKSYAIDINAVTKKVEDTFSNEGFDKAKARKEDAKPEDSSKSIVSSEDSNGNDKDGSTDEVTSKSTPDSVHVEQGFTAEHFQKADAIDINAVTTKVKYKFSNVAFDKAEAQREDAKYEDSSKSIISSEDSNGNDKDGSIDEIMSKRTLDSVHEEQGFSAEHFQKSDAIEINSVNTKVEGTFSNEGFDKAETQREDARPEDSIEDSNGNDKDGSIDEIISKSTLDSVHEEVEQGFSAEHFQKPDVLDINAVTTEVEGTFSNEGFEKAEADGEDAEPEASSKSIMSSEDSNCNDKDGSIDEITSKSTLDSVHEKQGFAAEHFQKPDVFDINAVSTKVEGAFPNEGFDKVEVQGEDAEPEDSSKPIMSSEDSRSNDKDGSIDAEKPSPIVHPVRVEHDTETESCLKESENPEAFTEGLLQSHKDNLTSESNDTLPGKDEGTENTHIISCSTNKDGNAIVVDKTPNGMSSSTHISVGGDKTKRVLGDSCQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDAVSSRETAIWLTKSLISSQKFNQET. 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05046 964 SUPERFAMILY Protein kinase-like (PK-like) 8 285 IPR011009 -
Seca7g05046 964 MobiDBLite consensus disorder prediction 444 460 - -
Seca7g05046 964 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 678 694 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 551 578 - -
Seca7g05046 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca7g05046 964 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05046 964 MobiDBLite consensus disorder prediction 526 541 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 709 725 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 388 408 - -
Seca7g05046 964 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 914 - -
Seca7g05046 964 CDD STKc_Nek 8 263 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 605 654 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 764 824 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 583 599 - -
Seca7g05046 964 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05046 964 MobiDBLite consensus disorder prediction 676 725 - -
Seca7g05046 964 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05046 964 Gene3D Transferase(Phosphotransferase) domain 1 89 274 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 526 655 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 444 494 - -
Seca7g05046 964 FunFam serine/threonine-protein kinase Nek6 isoform X2 89 277 - -
Seca7g05046 964 MobiDBLite consensus disorder prediction 758 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05046 Seca-Chr7 146187950 146196862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05046 15 310 MAP Kinase Kinase Kinase AT1G53570 30.921 7.92e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca7g05046 Pkinase 6.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05046 K08857 - gmx:100818558 1183.7