Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05041 ATGGCAGACCCTTATTCCAATTTCTTCTCCTCACCCTCAGCTAATTTCTTCCAATTCAATCCCACCCAGTACCACCACCATGGCCATTACCCTTCTAATCCATCCCCTTCTCCCTATCTCCACAACTTCATCAACCAGACCACCACCAACAACAACACCTTTTTCCACTACCACCACCTTCAAAGCACCACCACTGCATCTTCCTCTTCTTATTCCTCACCCCCTTCTCCTCCTCTTAGAGAAGCCCTTCCTCTTCTAAGCCTCATCCCAACAAAGCAAGAGGAATATGAAGAGCAAGAACAAGAGGAACATCACCAATCTTGCACTCCCATGATGGATGTGGAAGAGGACTGCAGGATCCTCCACCATAGTAAGCCCAAAGAGGAACAACAACACCATTATCATCATGAGGAGGAAGATGCAGAAGAAGAAGCTTCTGCTTCTGCTTCTGTTACTGTTGCACTTCACATAGGGTTACCAAGCCCTAGTGCTGCTGAGATGGCATCTGTGCTTTCTTCTTCTTCTGAGATTATCACTGAAAGAGAACAATTAGGAGATGGTAGCACTGAGGATTCTGGGTTCTTGCCTAATAGACTCAACAAAGGCCAATACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGTTACAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGAACCCAACCAACAGGTATGCTTAGACTTCCTTGCTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAGGATTTTAGGACTCTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGGGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGTATCTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTTAAAGATCACATAAAAGCTTTTGGGAGTGGCCATGGAGCTTATGCAGTTGATGGCTTTGAAGAAGAAGAAGAGCCAGCATCTGAAGTAGAACAAGACAATGACTCCACCCAGTAA 1143 0.4506 MADPYSNFFSSPSANFFQFNPTQYHHHGHYPSNPSPSPYLHNFINQTTTNNNTFFHYHHLQSTTTASSSSYSSPPSPPLREALPLLSLIPTKQEEYEEQEQEEHHQSCTPMMDVEEDCRILHHSKPKEEQQHHYHHEEEDAEEEASASASVTVALHIGLPSPSAAEMASVLSSSSEIITEREQLGDGSTEDSGFLPNRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHGAYAVDGFEEEEEPASEVEQDNDSTQ. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05041 380 PANTHER ZINC FINGER PROTEIN WIP2 47 376 IPR043584 GO:0003700|GO:0010468
Seca7g05041 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Seca7g05041 380 MobiDBLite consensus disorder prediction 126 142 - -
Seca7g05041 380 Gene3D Classic Zinc Finger 218 241 - -
Seca7g05041 380 FunFam Zinc finger protein WIP2 272 354 - -
Seca7g05041 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 323 IPR013087 -
Seca7g05041 380 SMART c2h2final6 219 241 IPR013087 -
Seca7g05041 380 SMART c2h2final6 303 323 IPR013087 -
Seca7g05041 380 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Seca7g05041 380 SUPERFAMILY beta-beta-alpha zinc fingers 285 323 IPR036236 -
Seca7g05041 380 FunFam zinc finger protein WIP2-like 218 241 - -
Seca7g05041 380 Gene3D Classic Zinc Finger 281 355 - -
Seca7g05041 380 SUPERFAMILY beta-beta-alpha zinc fingers 215 241 IPR036236 -
Seca7g05041 380 MobiDBLite consensus disorder prediction 126 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05041 Seca-Chr7 146142974 146145462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05041 1 377 C2H2 Transcription Factor Family AT3G57670 58.765 9.72e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05041 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05041 - - gmx:100813583 516.538