Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05031 ATGAACCACTTGACCATTGAGACTGAAGATTCTTTTGCGAGCTTGCTCGAGCTTGCAGCCAATAATGATGTTGAAGGTTTCAAACGGATGATTGAGCGGGATCCTTCCTGTGTAGATGAGGTAGGGCTATGGTACAGTCGGAGGAAGGGCTCAAAGCAGATGGTCAATGAGCTCAGAACACCTTTGATGGTAGCTGCTACTTATGGCAGCATTGATGTTATGAAACTGATTCTTTCACTATCTGATTATGATATTAATAAACCTTGCGGCCTTGACAAGAGCACCACCCTTCATTGTGCGGCATCAGGTGGAGCTGTAAATGCTGTTGATGTTGTTAACCTGCTTCTAGAAGCAGGGGCTGATCCAAATTCTGTGGATGGCAATGGTCATCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAATTTGTCAAAAGTAGTCTCGAAGAACTTCTTCAAGCTGATTACTCCAATGCAGATGCAGGGTATAATCTTAGGGTGATCACAGCCCCATCAAACACATATTCTCCACCTTTATCAGCTTCACCAGAGAATGGGTCTCCTTCTGCCTCAGATTTCCAGCTGAAGTCAAAGTTAAATGACGTTCCTATTTATTCTACATCAGAGAAGAAAGAATATCCTATTGACCCACCCCTTCCGGATATCAAGAATAGCATATATTCAACTGATGAATTTCGAATGTATTCTTTCAAGGTTCGACCTTGTTCTCGAGCGTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAAAATGCTCGAAGAAGGGACCCTAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTCCGGAAGGGTGCTTGCCGACGTGGTGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCGGCACAATATAGGACACGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCCCACACTGCAGAGGAGCTCAGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGCTCAAGCACTTCTTCTGCAATGGATTTTGCCGCAGCTATGAGCCTGTTACCTGGCTCTCCTTCATCAATGTCTGTCATGTCTCCTTCACCATTCACTCCACCTATGTCACCCTCTGCCAATGGCATGTCACACTCTTCTGTTGCTTGGCCCCAACCAAATATCCCAGCCTTGCATCTGCCAGGGAGCAATCTACATTCCAGTCGATTGAGATCTTCGCTCAATGCTAGAGATATTCCTGCCGATGACTTTGACATGTTGTCTGACTATGATGTTCAGCAACAACAGCTCCTTAATGAGCCTATGAATTCTAATACTATCAATCGCTCTGGCCGGATGAAAACTCTGACCCCGTCAAATCTTGATGATCTCTTTTCTGCTGAGAGCTCTTCCCCTCGGTTTGCTGATGCAGCATTGGCTTCAGCTGTTTTTTCTCCAACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAACAAAGCTTGCTGTCACCTGTGAATACAAACTTCTCTTCTAAAAATGTTGACCATCCTTTATTGCAGGCCTCTTTTGGTGTTCAAACATCAGGAAGGATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACATGAGAAGCATCAACAATTTCGTAGCCTTAGCTCTAGGGAACTTGGCTCCGGCTCTGCTACTGCTGGTGCTGGATCCCCAGTCAATTCTTGGTCAAAATGGGGACCCTCCAACAATGAATTTGATTGGGCTGTCAGTGGAGAAGAGTTAGGTAAGCTACGTAGATCATCTTCATTTGAGCTTGGGAATAATGGTGAGGAGCCTGATTTGTCATGGGTTCAGTCACTTGTTAAAGAATCTCCAAGTGAGATCAAGGAGAAGCAGGCAACAACTGGCTCAAGTGTTGCGGCGGCTGGATCCTCTGGTAATGGATCAAATACGGGCGCACCAATGGACTCCGTTGATCATGCTGTGTTGGGAGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAATTAA 2088 0.4516 MNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRRKGSKQMVNELRTPLMVAATYGSIDVMKLILSLSDYDINKPCGLDKSTTLHCAASGGAVNAVDVVNLLLEAGADPNSVDGNGHRPVDVIVVPPKLEFVKSSLEELLQADYSNADAGYNLRVITAPSNTYSPPLSASPENGSPSASDFQLKSKLNDVPIYSTSEKKEYPIDPPLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNIPALHLPGSNLHSSRLRSSLNARDIPADDFDMLSDYDVQQQQLLNEPMNSNTINRSGRMKTLTPSNLDDLFSAESSSPRFADAALASAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVDHPLLQASFGVQTSGRMSPRNVEPISPMSSRISMLAQHEKHQQFRSLSSRELGSGSATAGAGSPVNSWSKWGPSNNEFDWAVSGEELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKQATTGSSVAAAGSSGNGSNTGAPMDSVDHAVLGAWLEQMQLDHLVAQQN. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05031 695 MobiDBLite consensus disorder prediction 645 669 - -
Seca7g05031 695 SMART ANK_2a 10 39 IPR002110 GO:0005515
Seca7g05031 695 SMART ANK_2a 57 87 IPR002110 GO:0005515
Seca7g05031 695 SMART ANK_2a 92 124 IPR002110 GO:0005515
Seca7g05031 695 Gene3D - 274 335 - -
Seca7g05031 695 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Seca7g05031 695 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Seca7g05031 695 Gene3D - 1 226 IPR036770 -
Seca7g05031 695 SUPERFAMILY Ankyrin repeat 15 138 IPR036770 -
Seca7g05031 695 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Seca7g05031 695 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Seca7g05031 695 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Seca7g05031 695 Pfam Ankyrin repeats (3 copies) 49 126 IPR002110 GO:0005515
Seca7g05031 695 PANTHER UNKEMPT FAMILY MEMBER 17 639 IPR045234 -
Seca7g05031 695 MobiDBLite consensus disorder prediction 636 671 - -
Seca7g05031 695 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Seca7g05031 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Seca7g05031 695 MobiDBLite consensus disorder prediction 558 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05031 Seca-Chr7 145885796 145887904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05031 7 688 C2H2 Transcription Factor Family AT5G12850 53.638 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g05031 Ank_2 2.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05031 - - gmx:100813554 1068.14