Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g05030 | ATGCAGGAAAGAGAACAAGCACTGAGGTCATTCAAGAGTGGAAACACACCAATTCTAGTGGCAACGAAAGTTGCAACACGTGGTCTCGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGAAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGGAATTGGAGAAATAAGTACCCTAACTGAGGCAACATATCGTGACCTTTCAGGTGGTGAGCTTCAAAGGTTTGCTATTGCCGTTGTTGCCATCCAAAATGCTGAGATATACATGTTTGATGAACCTTCTAGCTTTCTTGATGTGAAACGGAGGCTGAAAGCTGCCCAAGTTACTCGATCATTGCTTAGGCCTAATAGCTATGTAATTGTTGTAGAGCATGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTTTATATGGCAAACCTGGTGCATATGGAGTGGTGACTAGGCTTCCTTGA | 585 | 0.4239 | MQEREQALRSFKSGNTPILVATKVATRGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLETAFFNDSNLSLAKPLADLMQEANQEVPGIGEISTLTEATYRDLSGGELQRFAIAVVAIQNAEIYMFDEPSSFLDVKRRLKAAQVTRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTRLP. | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g05030 | 194 | CDD | SF2_C_DEAD | 2 | 69 | - | - | |
Seca7g05030 | 194 | SMART | helicmild6 | 1 | 60 | IPR001650 | - | |
Seca7g05030 | 194 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 91 | 191 | IPR013283 | - | |
Seca7g05030 | 194 | Gene3D | - | 1 | 73 | IPR027417 | - | |
Seca7g05030 | 194 | Pfam | Helicase conserved C-terminal domain | 2 | 60 | IPR001650 | - | |
Seca7g05030 | 194 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 77 | 182 | IPR027417 | - | |
Seca7g05030 | 194 | Pfam | ABC transporter | 84 | 135 | IPR003439 | GO:0005524 | |
Seca7g05030 | 194 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 99 | IPR001650 | - | |
Seca7g05030 | 194 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 90 | IPR027417 | - | |
Seca7g05030 | 194 | Gene3D | - | 74 | 186 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g05030 | Seca-Chr7 | 145862597 | 145863657 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g05030 | 2 | 92 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.066 | 8.14e-17 | 75.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g05030 | K06174 | K11594 | cpap:110819753 | 168.703 |