Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05013 ATGGGAACTCCGGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCTGATTGCAAACTCATTGATTTCTTGCCCTTCACCTGCGATCGCTGCAACCAGGTGTATTGTTTGGAACACCGAAGCTATATTAAACATCAGTGTACAAAAGCTGATAAGCTAGATGTCACTGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGACCCGAACATAACTTGGGAGAATCATGTTAACACCGATTGTGACCCATCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCTTCGATGCAAAGAGATTTTAGTATTCTCAAACACAATCAAGTGCAAGGACTGCTTGGTAGATCATTGTTTAAAGCATCGTTTTGGACCTGATCATAATTGTCCAGGGCCCAAAAAATCGGAAACAAGTTTCTCATTTATGAGTCTTTTGAATAAGAGTAAAAAGGAGGAGTCTAAACCCAATTCAAAACCAACCTCCTCCTCCTCATCCAAATGGACTACAAGCTTTCTTAATGCGGCTTCTAATTTTCGAGCTTCAGCTGAGGCAGGCATGTCAAAGTTGGGTGGTGACATTAACCAAGCCTGGCAGACAGCAAGGGATGGGGTGGTGGGACAGAGCAGTGGCAGTGGTCAAGTGGAGCAGTGCCCTCAATGTGGTGCCAAGTTTTCCTCAGTCACTACTTTGGTGGACCATGTACAAAAAGTTCATGAAAGAAGTGGCAACCGAGCTGGGGTGAAGGTTACAATTGATGTTTGTCCTAAGTGCAGTAAGGGGTTTAGAGACCCTGTGTCCCTTGTGGAGCATGTTGAAAGGGATCATGGGGGTACCTCGAGAGCTTAG 870 0.4483 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKLDVTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYEKATKKKKCPALRCKEILVFSNTIKCKDCLVDHCLKHRFGPDHNCPGPKKSETSFSFMSLLNKSKKEESKPNSKPTSSSSSKWTTSFLNAASNFRASAEAGMSKLGGDINQAWQTARDGVVGQSSGSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRAGVKVTIDVCPKCSKGFRDPVSLVEHVERDHGGTSRA. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05013 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 249 - -
Seca7g05013 289 SUPERFAMILY beta-beta-alpha zinc fingers 224 279 IPR036236 -
Seca7g05013 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 251 IPR013087 -
Seca7g05013 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
Seca7g05013 289 Gene3D - 2 57 IPR035896 -
Seca7g05013 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Seca7g05013 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Seca7g05013 289 SUPERFAMILY AN1-like Zinc finger 56 143 IPR035896 -
Seca7g05013 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Seca7g05013 289 SMART c2h2final6 260 283 IPR013087 -
Seca7g05013 289 SMART c2h2final6 223 246 IPR013087 -
Seca7g05013 289 MobiDBLite consensus disorder prediction 155 175 - -
Seca7g05013 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Seca7g05013 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Seca7g05013 289 Gene3D - 80 161 IPR035896 -
Seca7g05013 289 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Seca7g05013 289 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Seca7g05013 289 ProSitePatterns Zinc finger C2H2 type domain signature. 225 246 IPR013087 -
Seca7g05013 289 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Seca7g05013 289 Gene3D Classic Zinc Finger 202 286 - -
Seca7g05013 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Seca7g05013 289 Pfam C2H2-type zinc finger 224 246 - -
Seca7g05013 289 Pfam Zinc finger, C2H2 type 261 283 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05013 Seca-Chr7 145547889 145550468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05013 1 289 C2H2 Transcription Factor Family AT2G41835 64.706 2.36e-132 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g05013 zf-AN1 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05013 - - gmx:100786272 479.559