Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05010 ATGGGAATTCTGTGCTTGTTGCATCTTCTGCTAACTTGGTATCTGTCCAACCCTTTGCTTGTTGGTGCTGGCTTCCAGGAACAAACTATACTACTTGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGATGTCAACAACTCAGATTACTGCTCTTGGCAAGGTGTCAGCTGTAATGATCACTCACTGGTGGAGAAGCTTGATCTCTCTCATCAGAATCTTCAAGGTAATATAACTTTGATGTCCAGGCTCAAATCTTTGCGGTGGCTTGACCTTTCAAATAACAACTTTCATGGATTGATTCCTCCTGTTTTTGGAAATTTATCTGACCTTGAATTTCTGGACATGTCATCAAACAAATTTGAAGGTTCAATTCCACCACAGTTTGGTGCTCTCAGGAGCCTCAAATCATTGAACCTTTCAAATAACTTGCTTGTGGGAGAAATACCAAAGGAACTTCAAGGTCTAGAGAATTTGCAGGAGTTTCAAATATCATGCAATCACTTGAGTGGTTTTATACCTTCTTGGGTGGGCAATTTGACCAATCTGAGAGTTTTTACTGCTTATGAGAATCATTTGGATGGCAGGATTCCAGATACTCTGGGATCAATTTCTGAGCTTCAAATACTTAATCTGCATTCAAACCACCTTGAAGGCCCAATACCAGCAAGCATTTTTTCTCCAGGGAAGCTACAAGTTCTGGTTCTCACCCAGAACAATTTAAGTGGTGATCTTCCTGAGGAAATTGGGAATTGCCAAAACCTTTCCAATGTTAGAATTGGCAGCAATCATCTTGTTGGTGCAATTCCTAGAAAGATTGGAAATCTTACTAGCCTTGCCTACTTTGAAGCTGACCATAATAACCTTTCTGGCAAGGTAGTATCAGAATTTTCTTTGTGTTCTAATCTCGCTCTATTGAATTTAGCTTCAAATGAATTCAGTGGAACAATTCCACCTGAGTTTGGAGAGCTTATGAACTTGCAGGAATTGATTCTTTCTGGAAATCACCTTGTTGGTGATATTCCAAATTCAATTCTGAGGTGCAAGAGTCTTAGTAGGCTTGACATAAGCAATAATAGGTTCAATGGAACACTTCCAAAGGAGATATGTAATATCTCTCGGTTGCAGTACTTGCTGTTGAATCAGAATTCCATAAGAGGAAAGATCCCTCGTCAAATTGGAAATTGTCCAGAACTTCTTGAATTGCAATTGGGCAATAACAATTTGACTGGAATCGTTCCTTCTGAGATTGGTTACATCAAGAATTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTCCATGGACCATTGCCCCCAGCATTAGGAAGACTAGACAAACTTGTTTCTCTGGATGTTTCAAACAATAATCTCTCAGGTAATATCCCAGATGAGCTTAAGCGAATGTTGAGCTTGATTGAGGTTAACTTCTCAAACAATCTGCTCAGTGGTCCAGTGCCATCATTTGTACCATTCCAGATGAGTCCTACTTCAAGTTTTTGGGGCAATGAAGGGCTTTGTGGGGAGCCATTGAACTCTTCATGCAGAGATCTTAATGATGATCAAAAGAATCACCATCACAGAGTTTCTTACCGAATCATAGTGGCCTTAATTGCATCAGGTATGGCAGTTTTTATATCAGTAACTGCAATTGTTTTGCTATTTAACATCAGAAAGGGGGATGCAAAGGTAGCAAATCATGCTGGGAGTGTTTTGGATGATGATCTAAGACAAGAAATAAACCTTGATGCTGTTGTTGAAGCAACTCTGACAAGCTCCAATCAGCTTAGCAGTGGCACTTTCAGTGTAGTTTACAAGGCAATCATGCCTTCTGGGTTGGTCTTATCTGTAAGGAGACTGAACTCCATGGACAATACAATAACCCACCACCTTCACAAGATGATTGAAGAACTTGAAGTGCTGAGCAAACTTTGTCATGATAATCTAATGCAACTCATTGGATATGTTATTTATAATGATGTTGCTCTTCTCATTCATCATTATTTACCCAATGGAACATTAGCTCAGCTTCTTCATGAATCTCCAAGAGAACCTGCATATCAACCTGACTGGCCAGTTAGACTATCCATTGCTATTGGAGTGGCAGAGGGTTTGGCTTTCCTTCATCAATTGGCAATCATCCACCTTGACATTTCTGCTAGCAATGTTCTCTTGGATGCAAATTCTAAGCCATTGATTGGGGAGATTGAGATATCAAAACTTCTGGATCCAACCAAAGGCACAAGCAGTATTAGTACAGTTGTAGGCTCCTTTGGTTACATTCCACCAGAATATGCATATACAATGCAAGTGACAAAAGCTGGAAATGTTTATAGCTATGGTGTGATTCTGCTGGAGATGCTTACAACTAAACCACCAGTTGGTGAGGCTTTGGATGAAGGTGTAGTAGATTTGGTGAAGTGGGTTAAGGGTGCTCCAGTGAGAAGGGAAACTCCAGGGCAGATATTGGATGGAAGGCTTAGCACAGTTTCATTTCGTTGGAGGAAAGAAATGCTTGCAGTTCTAAATGTGGCGTTGCTGTGCACTGACCATAGGCCAGCCAAACGACCAAAAATGAACGAAATCTGTTTTGTTTTGTTATTGAGAAACAAGTACAAGGAGACCACTGCCCTGGCTCCTAGCAGCATGAAGATTAAGGTCGTGGCTCCACCAGAGATAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGGTGATTGTTTTATCACAAGTCAACACTTTGCCATGTTGTTTTGCATCAAGTGCATATCCAAATGTAGTTCCAGAGGTTCTGAATCTTTTGTTATCTGAGGAGATCAAGATATTATCTATGTACTAG 2862 0.406 MGILCLLHLLLTWYLSNPLLVGAGFQEQTILLAINQELRVPGWDVNNSDYCSWQGVSCNDHSLVEKLDLSHQNLQGNITLMSRLKSLRWLDLSNNNFHGLIPPVFGNLSDLEFLDMSSNKFEGSIPPQFGALRSLKSLNLSNNLLVGEIPKELQGLENLQEFQISCNHLSGFIPSWVGNLTNLRVFTAYENHLDGRIPDTLGSISELQILNLHSNHLEGPIPASIFSPGKLQVLVLTQNNLSGDLPEEIGNCQNLSNVRIGSNHLVGAIPRKIGNLTSLAYFEADHNNLSGKVVSEFSLCSNLALLNLASNEFSGTIPPEFGELMNLQELILSGNHLVGDIPNSILRCKSLSRLDISNNRFNGTLPKEICNISRLQYLLLNQNSIRGKIPRQIGNCPELLELQLGNNNLTGIVPSEIGYIKNLQIALNLSFNHLHGPLPPALGRLDKLVSLDVSNNNLSGNIPDELKRMLSLIEVNFSNNLLSGPVPSFVPFQMSPTSSFWGNEGLCGEPLNSSCRDLNDDQKNHHHRVSYRIIVALIASGMAVFISVTAIVLLFNIRKGDAKVANHAGSVLDDDLRQEINLDAVVEATLTSSNQLSSGTFSVVYKAIMPSGLVLSVRRLNSMDNTITHHLHKMIEELEVLSKLCHDNLMQLIGYVIYNDVALLIHHYLPNGTLAQLLHESPREPAYQPDWPVRLSIAIGVAEGLAFLHQLAIIHLDISASNVLLDANSKPLIGEIEISKLLDPTKGTSSISTVVGSFGYIPPEYAYTMQVTKAGNVYSYGVILLEMLTTKPPVGEALDEGVVDLVKWVKGAPVRRETPGQILDGRLSTVSFRWRKEMLAVLNVALLCTDHRPAKRPKMNEICFVLLLRNKYKETTALAPSSMKIKVVAPPEIKYSVWIGGSILASLSTFQQVIVLSQVNTLPCCFASSAYPNVVPEVLNLLLSEEIKILSMY. 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05010 953 Pfam Protein kinase domain 593 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05010 953 Gene3D Ribonuclease Inhibitor 273 524 IPR032675 -
Seca7g05010 953 SUPERFAMILY L domain-like 40 303 - -
Seca7g05010 953 Gene3D Phosphorylase Kinase; domain 1 558 668 - -
Seca7g05010 953 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515
Seca7g05010 953 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515
Seca7g05010 953 SUPERFAMILY Actin-like ATPase domain 873 915 IPR043129 -
Seca7g05010 953 Pfam Leucine rich repeat 64 121 IPR001611 GO:0005515
Seca7g05010 953 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 874 - -
Seca7g05010 953 Gene3D - 897 916 - -
Seca7g05010 953 Pfam Actin 873 917 IPR004000 -
Seca7g05010 953 SMART LRR_typ_2 132 155 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 372 396 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 204 228 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 108 131 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 84 107 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 324 348 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 445 469 IPR003591 -
Seca7g05010 953 SMART LRR_typ_2 156 180 IPR003591 -
Seca7g05010 953 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 173 - -
Seca7g05010 953 Gene3D Ribonuclease Inhibitor 25 171 IPR032675 -
Seca7g05010 953 Gene3D Ribonuclease Inhibitor 172 272 IPR032675 -
Seca7g05010 953 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 224 519 - -
Seca7g05010 953 SUPERFAMILY L domain-like 197 516 - -
Seca7g05010 953 SUPERFAMILY Protein kinase-like (PK-like) 590 868 IPR011009 -
Seca7g05010 953 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 561 668 - -
Seca7g05010 953 PANTHER RECEPTOR-LIKE PROTEIN 55 263 863 - -
Seca7g05010 953 Pfam Leucine rich repeat N-terminal domain 42 59 IPR013210 -
Seca7g05010 953 ProSitePatterns Tyrosine protein kinases specific active-site signature. 713 725 IPR008266 GO:0004672|GO:0006468
Seca7g05010 953 Gene3D - 873 896 - -
Seca7g05010 953 ProSiteProfiles Protein kinase domain profile. 590 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g05010 953 Gene3D Transferase(Phosphotransferase) domain 1 669 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05010 Seca-Chr7 145495187 145501072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05010 1 866 Receptor kinase-like Gene Family AT2G41820 64.253 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g05010 Pkinase 1.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05010 - - adu:107492611 1291.17