Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05003 ATGGAAGAACACTATGATGCACTTATTCCATTAGATATTGAAGAAGACAGGTCTGAAGAAGGGTTGAGGCATCATCCACCACAAGAGTGTAGACCTGAGATCAATAATTCATATGAATATGATGTCGTTCCTGCACCACAGAATGGGATGGTATTTAGTTCAGAGGATGAGGTGAGATCGTATTATACCAAATATGCCAACCAAGAAGGTTTTGGCATCATGACAAGAACGTCAAAAAAGGGAGCTGATGGAAAGGTTGGATATTTTATACTGGCATGTTCCAGAGAAGGAAATAGAAGAACCAGTAAAAAGAATCCCATCAGAAATTGTCCATCAAGGAAACAGAAGTGTGAAGCCAGGATCATTGTATATTTATGTAAAGATGGAACCTACCAAATTAAAACAGTTACACTTAATCACAATCATGAATTGAATCCAGGTCAAGTCAAGTCTAGAAATAATATTGATATTAAAATGGGATTGAAAAGGACATTAGATCCAAATGATCAAGCTGAGAAGCGAGTGAAGAAGAGTATTGGGTGTCTTGTGGTTGAAGATGAGGCCTTTGAAAATTTGGCATTTTTTGAACATGGTTTTGGAAACTACATTCAGAAAGAAAAACGACTTATTGGGAAGGATGGAGATGGTTATGCCCTTTATAAGTATTTTATGCGGATGCAAGAAAAAGATAGCAATTTCTTTTATGTAATTGACTTTGATGATTGCTTCTGTGCAAAGAATGTTTTCTGGGCTGATGGAAGGAGTAGAGTTGCATATAAATCATTTGGTGATGTGGTGACATTTGATACTGTGTGTCTCTCTAACCAATACAAAGTGCCTCTTACATTCTTTGTTGGAGTTAACCATCATGGACAATCTGTACTTTTTGGTTGTGGGTTGTTGTCTTGCCAAGACACACAGTCATTTGTTTGGTTGTTTCAATCATGGCTAGTTTGCATGTCTGGTGTTCCACCCAAAGGTATCATAACAGATCAATGCAAGGCCATGCAGAGTGCAATTGGAATTGTTTTCCCTTCCACTCGACATTCTTGGTGTTCATCTCATATTATGAAAAAGCTTCCTCAAAAAATACGTGGACATGCTGAGTACAAGTCTATAAGTTACCATTTGCAGAATGCTGTATATGATACATTCGCTACAAATGAATTTGAAATGGCCTGGAGAAAAATTGTGGAGGAATTTGGCTTAGAGAACAATGAATGGTTGCAGGAGTTGTTCCTTGAAAGACATAGATGGGTTCCTACCTTTGCAAGGTGTAGTTTTTGGGCTGGAATGTCTACTACCTCACGTGGTGAAATCATGCATGCTTTTTTTGATGGATTTATTGATGGCCAAACAACTTTACAACAGTTTCTTGATAAATATGATATTGCATTGCAAGCCAAAGCAGAAAAAGAGTTTGAAGCTGATTTCCGTTCATTCTGTAGCACTCTTGGATGTGCTACGAAATCTCCATTTGAGCGGCAATTCCAATCTGCATACACTCATGCAAAATTTCTAGAGGTTCAGAAAGAATTTGTAGGAAAGGCTGATTGTAATGTTTGTGTTGCCCGTGATGAAGGTTCTATTTGTCACTATAATGTCATTGAAGATGTGATGATGGGGGATAAACCCAAGGAATCCATATTTCAAGTCACATTTGACAGGGTTAACTGTGATGTAAAGTGCATATGCAACATGTTTGAATTTAGAGGTATACTTTGTAGGCATTCACTTGCTATACTCTCCCAGGAGCGAGTAAAGGAGATTCCCTGTAAATATATCTTGGATAGATGGAGGAAAAGTTTAAAGAGGAGGCACGCATATGTAAAGACCAGCTACACTACTAAGCAGCTTCAACCTCAGATGCAAAGGTTTGATTTATTATGCAAGCAATTTGATAGTGTTGCTGAAATTGCTTCTGAATTTGAGGAAACAAGTTCTTTTGTAAAAAGTAACATATCTGACCTGAAAGATAAGTTGGAAGCATGGGCAGCTCGTTTGAGAAACTCATCTGAGGTGGCAGTGCCTATAAGCTGTGCAATTGAAAGTACTTGA 2058 0.3795 MEEHYDALIPLDIEEDRSEEGLRHHPPQECRPEINNSYEYDVVPAPQNGMVFSSEDEVRSYYTKYANQEGFGIMTRTSKKGADGKVGYFILACSREGNRRTSKKNPIRNCPSRKQKCEARIIVYLCKDGTYQIKTVTLNHNHELNPGQVKSRNNIDIKMGLKRTLDPNDQAEKRVKKSIGCLVVEDEAFENLAFFEHGFGNYIQKEKRLIGKDGDGYALYKYFMRMQEKDSNFFYVIDFDDCFCAKNVFWADGRSRVAYKSFGDVVTFDTVCLSNQYKVPLTFFVGVNHHGQSVLFGCGLLSCQDTQSFVWLFQSWLVCMSGVPPKGIITDQCKAMQSAIGIVFPSTRHSWCSSHIMKKLPQKIRGHAEYKSISYHLQNAVYDTFATNEFEMAWRKIVEEFGLENNEWLQELFLERHRWVPTFARCSFWAGMSTTSRGEIMHAFFDGFIDGQTTLQQFLDKYDIALQAKAEKEFEADFRSFCSTLGCATKSPFERQFQSAYTHAKFLEVQKEFVGKADCNVCVARDEGSICHYNVIEDVMMGDKPKESIFQVTFDRVNCDVKCICNMFEFRGILCRHSLAILSQERVKEIPCKYILDRWRKSLKRRHAYVKTSYTTKQLQPQMQRFDLLCKQFDSVAEIASEFEETSSFVKSNISDLKDKLEAWAARLRNSSEVAVPISCAIEST. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05003 685 Pfam SWIM zinc finger 558 583 IPR007527 GO:0008270
Seca7g05003 685 MobiDBLite consensus disorder prediction 1 33 - -
Seca7g05003 685 SMART 26again6 561 588 IPR006564 GO:0008270
Seca7g05003 685 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 663 IPR031052 GO:0006355
Seca7g05003 685 Pfam FAR1 DNA-binding domain 60 146 IPR004330 -
Seca7g05003 685 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Seca7g05003 685 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g05003 685 Pfam MULE transposase domain 265 359 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05003 Seca-Chr7 145351818 145356085 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g05003 MULE 2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05003 - K17604 gmx:102660547 815.068