Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04994 ATGGTTTCCTCTTCTTCAGACCCTGGCAAGTCCGAAGCTGGTGGCGGTGGCGCCGTGGAGACTGCAGAAGCTGCGGTGGCGAACGATGATGTGTTACTGTACAGGGGATTGAAGAGAGCGAAGAAAGAGAGAGGGTGTACTGCGAAAGAGCGCATCAGCAAAATGCCTCCTTGTGCTGCCGGCAAACGCAGCTCCATATACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTACGAAGCACATCTCTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGGTCAGTTCTTAGGGGCATATGATGATGAAGAGGCGGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCGGGTGCTCTTATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTTTACGACGGAAGAGCAGTGGTTTTTCAAGAGGACTATCCAAATATCGGGGGCTCTCCAGTCGGTGGGAGCCATCATATGGTCGAATGGCTGGACCTGACTACTTCAATAGCATATATTGTGGTGATGATTCGGCAGCAGAAACCGAGTCTGTAAGTGGTTTCTTCATAGAAAGAAAGTTTGATTTAACAAGTTACATCAAGTGGCGGGGATCTAATAAAAGTCGACAACCTGATGCTGGAGCAAGATCATCAGACGAAAAAAAGCATGGTTTTGCTGGAGATATTTGCTGTGAACTCAAAATATTGGAAAAAAAAATTCAACCTTCAGAACCATACCGGTTGCCAGAGCTAGGCATGCCCCACAAAGGGAGAAAACATAAACTTTCTTCAGCCTCTGCTTTAAGTATCTTGTCACAATCAACTGATTACAAGAATTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAGCAATGATAATGATGAGAATGAAAATAAAAATACCATCAATAAGTTGGACCATGGCAAGATGGCTGAGAAATCATCACATCATGATGGTGGAAATGAAAGACTTGACATTGCAATGGGAATGAGTGGATCACTGCCTCTTCAAAGAAATGTGTACCCATTGACTTCATTGTTGTCTGCTCCGCTTTTGACAGCCTACAATACTGTTGATCCCATGGTAGATCCTGTTCTGTGGACGCCTCTTGTTCCTATTCTTCATGCTGGCTTTTCCGGTGTAGCTGAGGTTGTTACAAAGACTGAGACCAGTTCAACGTACATCAATTTTCAGGAAGAGGAGTGA 1272 0.4442 MVSSSSDPGKSEAGGGGAVETAEAAVANDDVLLYRGLKRAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGQFLGAYDDEEAAARAYDLAALKYWGPGALINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGPDYFNSIYCGDDSAAETESVSGFFIERKFDLTSYIKWRGSNKSRQPDAGARSSDEKKHGFAGDICCELKILEKKIQPSEPYRLPELGMPHKGRKHKLSSASALSILSQSTDYKNLQEKASKRQENSNDNDENENKNTINKLDHGKMAEKSSHHDGGNERLDIAMGMSGSLPLQRNVYPLTSLLSAPLLTAYNTVDPMVDPVLWTPLVPILHAGFSGVAEVVTKTETSSTYINFQEEE. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04994 423 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g04994 423 SMART rav1_2 66 139 IPR001471 GO:0003700|GO:0006355
Seca7g04994 423 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Seca7g04994 423 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Seca7g04994 423 Pfam AP2 domain 66 125 IPR001471 GO:0003700|GO:0006355
Seca7g04994 423 SUPERFAMILY DNA-binding domain 65 134 IPR016177 GO:0003677
Seca7g04994 423 MobiDBLite consensus disorder prediction 266 285 - -
Seca7g04994 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 318 - -
Seca7g04994 423 MobiDBLite consensus disorder prediction 301 344 - -
Seca7g04994 423 Gene3D AP2/ERF domain 66 135 IPR036955 GO:0003700|GO:0006355
Seca7g04994 423 ProSiteProfiles AP2/ERF domain profile. 66 133 IPR001471 GO:0003700|GO:0006355
Seca7g04994 423 MobiDBLite consensus disorder prediction 299 344 - -
Seca7g04994 423 FunFam AP2-like ethylene-responsive transcription factor 65 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04994 Seca-Chr7 145112575 145118075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04994 24 406 AP2-EREBP Transcription Factor Family AT2G41710 63.010 3.82e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g04994 AP2 8.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04994 K09285 - gmx:100814117 620.928