Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g04977 | ATGGAGAGTTTGTTGAAGGATTTCGAACTGAAAAACAAGGAGCGTTCCATCGAAGCTTTGAGTAGATGGAGATCTTACGTCTCTTTGGTCAAGAACCGTCGCAGAAGGTTCCGCAATGTCGCAGATCTCGAAAAACGTACCCAAACACAGGAGCACATCCAAAAGTTACAGGGAAAGATACGGTCTGTTATCATTGCCCAACAAGCAGCACTACATTTTACGGATGGTAAGTTCTTTTGTGCAGCTATTGGTACAACTGAATACAAGGTATCAGAGAAGACGAGAGAAGCTGGTTTTGGTATTGAACCAGATGATATTGCATCAGTTGTTCGAAGCCATGACTACAAGAACTACAGAAAAATTGGTGAAGTTGAAGGGATTATAAGTAAACTCTCAGTCTCAGTTGAAGAAGGTGTCAGTCAAGACAGTATACATAGCAGGCAAGAGATTTATGGACTCAACCGTTATCCTGAGAAGCCTTCTAAAAGCTTGCTGATGTTTGTTTGGGATGCATTGCATGATTTAACGCTAATCATTCTTATGGTTTGTGCTATAGTCTCTATAGGTATAGGGCTTCCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTCTTGGAATCATACTCAGTGTATTTTTGGTAGTCATTGTTACTGCTATCAGTGACTACCAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATTTGGTAGTGGGAGATATTGTTCATTTGGCAACTGGTGATCAAGTTCCAGCTGATGGGGTTTATATATCAGGGTATTCATTGCTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCGGTAAATATAGATAAACAAAGACCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGGTAGTTACAACTGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTAAATGAGGGAGGAGAGGATGAGACTCCACTGCAGGTGAAATTGCATGGAGTTGCTACAATTATTGGTAAAATTGGTTTGACTTTTGCTGTGCTGACATTTGTGGTGTTGACAATAAGGTTTCTGGTTGAAAAAGGAGTTAATGGTGATTTTGGTAGTTGGTCTTCAAATGATGCATTGAAGCTGCTTGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTACCACTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTGATGAATGACAGGGCACTTGTGAGACATCTTTCTGCATGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCATATGGTGGTTAATAAAATTTGGATATGTGAAAAGACCATGGAAATGAAAGGTAATGAGAGTGCAGACAAACTGAAAACAGAGATATCTGAAGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCATCCGAAGTAGTTAAGGGCAAAGATGGAAATAAGACAATATTAGGAACACCAACTGAATCAGCATTGTTGGAATTTGGCTTGCTTTCAGGTGGTGATTTTGATGCCCAACGTAAAACCTGTGAGGTACTTATGGTTGAGCCTTTCAATTCATCCCGGAAGAAGATGTCTGTGCTTGTGGAACTTCCTGATGGAGGAGGGGTCAGAGCTTTCTGCAAAGGTGCATCAGAGATAGTATTAAAAATGTGTGACAAAATTATTGATTCTAATGGAACAGCTGTTGATCTTCCTGAAGAGCTAGCAAACAAAGTCTCTGATGTTATAAATGGCTTTGCCTCTGAAGCATTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGAAAACCAAGGGGAAAAAAGCATCCCTGATAATGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGGGTTAGGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATAAACACAGCTAGGGCTATAGCTAAAGAATGTGGTATACTTACTGAGGATGGTGTAGCCATAGAAGGACCAGCATTTCGTGACTTGTCTCCAGAGCAAATGAAGGATGTCATACCAAGAATTCAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTGGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCCATGGGGATAGCTGGAACCGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAAATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAATGTTGTTGCTCTGGTTATTAACTTTGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCAACTGAACCTCCTAATGATGGACTTATGGAAAGACTCCCAGTTGGAAGGACAACAAGTTTTATCACCAAACCAATGTGGAGGAATATTTTCGGTCAAAGTTTATATCAACTAATTGTCCTTGCAATTCTCAATTTTGATGGGAAGAGGCTACTAGGACTTACTGGCTCAGATGCAACTATAATGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTTAATGAGATAAACAGCCGAGAAATTGAAAGGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTTACTGTGATTTTCTCCACAGTGGTATTTCAAGTAATCATAGTTGAGTTCTTGGGAACATTTGCCAGCACGGTGCCTCTAAACTGGCAATTCTGGTTACTCAGCGTGGTAATTGGAGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACTACAAAGCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCTGAGCTGGCATGA | 3120 | 0.4119 | MESLLKDFELKNKERSIEALSRWRSYVSLVKNRRRRFRNVADLEKRTQTQEHIQKLQGKIRSVIIAQQAALHFTDGKFFCAAIGTTEYKVSEKTREAGFGIEPDDIASVVRSHDYKNYRKIGEVEGIISKLSVSVEEGVSQDSIHSRQEIYGLNRYPEKPSKSLLMFVWDALHDLTLIILMVCAIVSIGIGLPTEGWPKGVYDGLGIILSVFLVVIVTAISDYQQSLQFRDLDKEKKKIFVQVTRDGKRQKISIYDLVVGDIVHLATGDQVPADGVYISGYSLLIDESSLSGESEPVNIDKQRPFLLSGTKVQDGQGKMVVTTVGMRTEWGKLMETLNEGGEDETPLQVKLHGVATIIGKIGLTFAVLTFVVLTIRFLVEKGVNGDFGSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTMEMKGNESADKLKTEISEEVLSILLQAIFQNTSSEVVKGKDGNKTILGTPTESALLEFGLLSGGDFDAQRKTCEVLMVEPFNSSRKKMSVLVELPDGGGVRAFCKGASEIVLKMCDKIIDSNGTAVDLPEELANKVSDVINGFASEALRTLCLAVKDINENQGEKSIPDNGYTLIAIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTARAIAKECGILTEDGVAIEGPAFRDLSPEQMKDVIPRIQVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERLPVGRTTSFITKPMWRNIFGQSLYQLIVLAILNFDGKRLLGLTGSDATIMLNTLIFNSFVFCQVFNEINSREIERINIFRGMFDSWIFFTVIFSTVVFQVIIVEFLGTFASTVPLNWQFWLLSVVIGAVSMPIAAILKCIPVEKDTTKHHDGYEALPSGPELA. | 1040 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g04977 | 1039 | SMART | Cation_ATPase_N_a_2 | 118 | 192 | IPR004014 | - | |
| Seca7g04977 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 207 | 377 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 724 | 845 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 395 | 520 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 552 | 702 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 461 | 666 | IPR023299 | GO:0000166 | |
| Seca7g04977 | 1039 | SFLD | p-type atpase | 437 | 810 | IPR044492 | - | |
| Seca7g04977 | 1039 | Pfam | Cation transport ATPase (P-type) | 512 | 596 | - | - | |
| Seca7g04977 | 1039 | Gene3D | - | 15 | 75 | - | - | |
| Seca7g04977 | 1039 | Pfam | E1-E2 ATPase | 240 | 433 | - | - | |
| Seca7g04977 | 1039 | SFLD | Haloacid Dehalogenase | 437 | 810 | - | - | |
| Seca7g04977 | 1039 | Gene3D | - | 465 | 661 | IPR023299 | GO:0000166 | |
| Seca7g04977 | 1039 | FunFam | Calcium-transporting ATPase | 217 | 338 | - | - | |
| Seca7g04977 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 789 | 814 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 614 | 632 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 757 | 773 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca7g04977 | 1039 | CDD | P-type_ATPase_Ca_PMCA-like | 147 | 890 | - | - | |
| Seca7g04977 | 1039 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 47 | IPR024750 | GO:0005516 | |
| Seca7g04977 | 1039 | FunFam | Calcium-transporting ATPase | 774 | 1020 | - | - | |
| Seca7g04977 | 1039 | FunFam | Calcium-transporting ATPase | 15 | 75 | - | - | |
| Seca7g04977 | 1039 | FunFam | Calcium-transporting ATPase | 654 | 802 | - | - | |
| Seca7g04977 | 1039 | Gene3D | - | 170 | 1016 | - | - | |
| Seca7g04977 | 1039 | Gene3D | - | 452 | 802 | IPR023214 | - | |
| Seca7g04977 | 1039 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 112 | 1019 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Seca7g04977 | 1039 | SUPERFAMILY | HAD-like | 454 | 862 | IPR036412 | - | |
| Seca7g04977 | 1039 | SUPERFAMILY | Calcium ATPase, transduction domain A | 240 | 336 | IPR008250 | - | |
| Seca7g04977 | 1039 | PANTHER | CATION TRANSPORTING ATPASE | 91 | 1018 | - | - | |
| Seca7g04977 | 1039 | FunFam | Calcium-transporting ATPase | 465 | 661 | - | - | |
| Seca7g04977 | 1039 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 122 | 1018 | IPR023298 | - | |
| Seca7g04977 | 1039 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - | |
| Seca7g04977 | 1039 | Pfam | Cation transporting ATPase, C-terminus | 842 | 1015 | IPR006068 | - | |
| Seca7g04977 | 1039 | Pfam | Cation transporter/ATPase, N-terminus | 122 | 187 | IPR004014 | - | |
| Seca7g04977 | 1039 | Gene3D | - | 138 | 338 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 286 | 300 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 676 | 686 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 654 | 665 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 781 | 793 | - | - | |
| Seca7g04977 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 757 | 776 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g04977 | Seca-Chr7 | 144808066 | 144818771 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca7g04977 | 59 | 1036 | Primary Pumps ATPases | AT3G57330 | 72.699 | 0.0 | 1467 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g04977 | K01537 | - | gmx:100791934 | 1691.4 |