Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04973 ATGGATCACACGGGCAAACCCAACCACTCGCTCTCCTACTCCACTCTCTTCAATCTTGAGTCTCTGATGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAAGAGAGCAGAGGTAGCCAAGGTGGTGGGGCAATTGCAAATCACAGTAATGGCAATGTGCACGCAAAGGAGGTGAATTTGTTAAAGAAGAGGGCGTGGTCGCAAAACAGTGATGATGAGGATGAGAGCAGTTTTTACAGGACATACATGACAGAGGAGCGGTATAGATCAATGCTCGGAGACCATGTTCAGAAATATAAGAGGAGGTCTAAGGATGCCTCCTCTAGTCCTGCTCAAAATCGGGTTGCTGTCCCACTTGTCAAAAGTAACACTGGCTCAAAAGCACGAAAGTTAGGGAATGATCTCAGGGGAGGACTGCAAGCTGCAGAGACTACATCTGAATGGGTATACGATTCCAATTCTCAGAAACCAGGAAACTACCGTGATGCAGATTTCATGCAGCAATATGCCACTGATAGGGTTATGTATGAACCTGCTACTTTAGAAATTGGGGATGGTATCGCTTACAAGATTCCTCCAATTTATGATAAATTGGCTTCAATGCTGAACCTTCCAAGCTTCCCTGATATCCATGTGGATGAGTTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTGCTGATAAAAGGTTTGGGAATAGAAACCGAGCTGGAATGGGGGAACCCCTATCTCAATATGAATCACTTCAGGCACGAATGAAGGCCATGTCAGCTTCTAATTCACCTCATAAATTCAGTCTGAAAGTGACTGATGCTGGTTTAAATTCATCCATTCCGGAGGGAGCTGCTGGAAGCATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGACACCTACGAGATCATTGAGCGAAGCCTACCTAAGAAACAAAAGTTAAAAAAAGATCCAGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTAATTTTCATCGAAAGCAACTCGTTGATGCCAAGAGATGCTCAGAGTACTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAAATGGATTAGGAGTGCTAGCATTCGCACCCGGAAACTATCTAGAGACATGCTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAACTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAATAAGTCAAACATACTATCTTCGGAACCCATGGTAGAGGAGGAAACAAATGATCAAGATGCACTGTTTGACTCTTCAGATGTTGGGTCTAAGGAGGAGGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGCCTCGAAGCAGAGAAGGTTGACTAGTGCTTTTGACAGTGAATGCCTGAGGCTGCGCCAGGTGGGTGAAACTGATTCACTCGCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGGCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAACGGTATACTAGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGCCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATAAAAAGTTCAAACAGTATACGATGGAAGACACTCCTCAGCTTTAATTGTCGAAATCGCCTTCTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACAAGGAAAACTGAGATTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAAAACAAGATATCTCTTGCTGAACTGTTTGATGGTAATCGTGGGCAGCTCAATGAGAAGAAAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACTTTTACTTTGGAGAGATTCCAAATTCCCTTCCGCCTCCTCCATTTGGGGAATTGGAGGATGTATACTATCCTGGAAGTCACAACCCCATATCATATGAGGCACTGCGGGGATATGAAATGGGATTATTGGTACTAGACAGACATTGA 2847 0.4233 MDHTGKPNHSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDEESRGSQGGGAIANHSNGNVHAKEVNLLKKRAWSQNSDDEDESSFYRTYMTEERYRSMLGDHVQKYKRRSKDASSSPAQNRVAVPLVKSNTGSKARKLGNDLRGGLQAAETTSEWVYDSNSQKPGNYRDADFMQQYATDRVMYEPATLEIGDGIAYKIPPIYDKLASMLNLPSFPDIHVDEFYLKGTLDLGSLAAMMAADKRFGNRNRAGMGEPLSQYESLQARMKAMSASNSPHKFSLKVTDAGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKLKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTNFHRKQLVDAKRCSEYCQREVRMKVSRSLKWIRSASIRTRKLSRDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNILSSEPMVEEETNDQDALFDSSDVGSKEEEDPEEAELKKEALKAAQEAASKQRRLTSAFDSECLRLRQVGETDSLAQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEIMVHCKLSSRQQAFYQAIKNKISLAELFDGNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPNSLPPPPFGELEDVYYPGSHNPISYEALRGYEMGLLVLDRH. 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04973 948 ProSiteProfiles DBINO domain profile. 357 482 IPR020838 GO:0003677
Seca7g04973 948 Coils Coil 515 535 - -
Seca7g04973 948 MobiDBLite consensus disorder prediction 30 57 - -
Seca7g04973 948 PANTHER HELICASE SRCAP-RELATED 490 909 - -
Seca7g04973 948 MobiDBLite consensus disorder prediction 30 61 - -
Seca7g04973 948 Pfam DNA-binding domain 353 481 IPR020838 GO:0003677
Seca7g04973 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 896 IPR027417 -
Seca7g04973 948 Coils Coil 429 468 - -
Seca7g04973 948 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Seca7g04973 948 MobiDBLite consensus disorder prediction 502 516 - -
Seca7g04973 948 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Seca7g04973 948 Gene3D - 585 827 IPR038718 -
Seca7g04973 948 MobiDBLite consensus disorder prediction 487 516 - -
Seca7g04973 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 818 IPR027417 -
Seca7g04973 948 Gene3D - 828 897 IPR027417 -
Seca7g04973 948 SMART ultradead3 586 781 IPR014001 -
Seca7g04973 948 FunFam Putative DNA helicase INO80 562 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04973 Seca-Chr7 144762520 144776040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04973 611 900 RAD5 or RAD16-like Gene Family AT5G43530 29.167 2.67e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g04973 SNF2_N 6.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04973 K11665 - gmx:100780615 1555.81