Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04968 ATGGCTACTTCCTCATCAAATTCAAAGCACGATGTTTTTCTCAACTTTAGAGGAGAAGATACTCGTTGCACATTCACAAGCCATCTTTACTCTGCCTTGTGTCGAAATAAAATCCACACATTCATTGACGACGAGGAAATTAAGAGAGGAGATAAACTGTCACCAACACTTCTTTCAGCTATTGAAACCTCCAAGATTTCAGTAACAATTTTCTCACAGAATTATGCTTATTCTGCGTGGTGTTTGGATGAGCTCCACAAGATCATCGAGTGCAAAGAGAAGAAACAGCTTATTGTGATTCCTGTCTTCTATCACATCGATCCATCACATGTAAGACACCAAAGGGGAACTTATCAAGATGCATTTACCAAACATGAGGAAAATTTCAGGGACAATCTAATGAAGGTGCAGAATTGGAGAATTGCTCTGCGTGAAGCAGCCAACTCAGCAGGATGGGATTCCTCAAATATTAGTAGGCTGGAGTCCGAATTAGTTGAAAAAATTGTTGAAGATATATTACAGAAATTGAATCGTATGAGTCCACAGCTTCCAAAGGGGCTTGTTGGAATTACTAGACACATTGCACATGTGGAATCATTGTTATGCGCAGGGTCAACTGATGTACGTTTTGTTGGAATTTGGGGCATGGGTGGGATAGGTAAGACAACCATTGCAGAAGCTCTGTGTGCAAAACTCTCTTCTCAGTACGAGGGATGCTACTTTGTTGCCAATGTGAGGGAGGAATGGAAAAATCATAGAGAAAATGATTTACGGAATCAACTTCTGACCGGAATATTTGGGGACCAAAATTTGTATATTAGCACCCCTACTATGAGTTCCTCTTTTGTTGTGGAAAGGCTTCAACGTAAAAAGCTCCTCATCGTTCTTGATGATGTGAGTGATTCAAAACAAATAGAATATCTTGTGGGAGAGAAACATTGGTATGGACCTGGTAGTAGAATCATAGTGACTACCAGGAATAAAGATGTGTTGAACAGAGGAGTTGATGGTGTTTACCAAGTGATGGAGTTGAATTTTCATGAAGCACTAGAGCTTTTTAGCTTGAATGCGTTTCAACAAGACCATCCAATGAGGGAATATAGACACTTGTCAGAAAGGGCGGTAGATTATGCTAAGGGCGTTCCATTAGCTCTTAAAGTTCTGGGTACATATCTATATTCCAAACAACCAAAAGAATGGGATAGTGCATTGGAGAAACTGAAGAAAATTCCCAAAGGTGAAATTTATGATGTTTTAAGATTGAGTTATGATGGATTAGACCCAGATGAGCAGAATATATTTTTAGACATTGCATGCTGTTTGAAAGGAGAGACAAAAAGCCGTATAACAAGTATATTAGATGGTTCCGACTTTTCTACAGATATTGGGATCAGAAGCCTTCTAGATAAGTCTCTTATAACTGTTTCTAAAGACCACACGGTACAGATGCATGATTTGATACAAGAAATGGGTTGGCAAATCGTTCGTGAAGAATCTATGAGAGAGCCTGGAAAACGAAGTCGGTTGTGGGATCCTAAGGAAATATATGAAGTCCTCAAGTATAACAAGGGTACTGACAGTATAGAAAGCATAGTATTGGACACTTCTCAAATCAAAGACGTGACAATAAGCCCTCAAATTTTCCACAGAATGTACAAGCTGAGGCTTTTGAATTTTTATATGCCCTCAAGCGATAAGAGAAGCAACGTACATATTTCTAGAGGCCTCGAAAGTATGCCTGATGAATTAAGTTATCTCCGTTGGGACTGCTTTCCATTGACATCCTTGCCACCGTCATTTTGTGCGGAGAAACTTGTTGAACTTGATCTAAAACATAGTCTCATTGAAAGACTTTGGGATGGAAAGCAGGATCTTGTAAATTTGAAGTCATTATACCTTTGTGGTAGCAAGCACCTGATTGAGCTCCCAGATTTCTCTATGGCCTCAAAACTTGAAGAAGTACATCTTGATGATTGTACAAGTTTGTTGAATGTTCCTTCATCCATTTTGTCACTCGATAGCCTTTTTGCTCTAAATTTGAGAGGCTGTAAAAGCTTCATTACATTCAAAGTGAGAAGCAATCAAGATCTCTTCGTTGGCTTAATCTGA 2109 0.3912 MATSSSNSKHDVFLNFRGEDTRCTFTSHLYSALCRNKIHTFIDDEEIKRGDKLSPTLLSAIETSKISVTIFSQNYAYSAWCLDELHKIIECKEKKQLIVIPVFYHIDPSHVRHQRGTYQDAFTKHEENFRDNLMKVQNWRIALREAANSAGWDSSNISRLESELVEKIVEDILQKLNRMSPQLPKGLVGITRHIAHVESLLCAGSTDVRFVGIWGMGGIGKTTIAEALCAKLSSQYEGCYFVANVREEWKNHRENDLRNQLLTGIFGDQNLYISTPTMSSSFVVERLQRKKLLIVLDDVSDSKQIEYLVGEKHWYGPGSRIIVTTRNKDVLNRGVDGVYQVMELNFHEALELFSLNAFQQDHPMREYRHLSERAVDYAKGVPLALKVLGTYLYSKQPKEWDSALEKLKKIPKGEIYDVLRLSYDGLDPDEQNIFLDIACCLKGETKSRITSILDGSDFSTDIGIRSLLDKSLITVSKDHTVQMHDLIQEMGWQIVREESMREPGKRSRLWDPKEIYEVLKYNKGTDSIESIVLDTSQIKDVTISPQIFHRMYKLRLLNFYMPSSDKRSNVHISRGLESMPDELSYLRWDCFPLTSLPPSFCAEKLVELDLKHSLIERLWDGKQDLVNLKSLYLCGSKHLIELPDFSMASKLEEVHLDDCTSLLNVPSSILSLDSLFALNLRGCKSFITFKVRSNQDLFVGLI. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04968 702 Gene3D - 175 337 IPR027417 -
Seca7g04968 702 Gene3D - 2 174 IPR035897 -
Seca7g04968 702 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Seca7g04968 702 Pfam NB-ARC domain 194 411 IPR002182 GO:0043531
Seca7g04968 702 ProSiteProfiles TIR domain profile. 8 176 IPR000157 GO:0007165
Seca7g04968 702 Gene3D Ribonuclease Inhibitor 520 695 IPR032675 -
Seca7g04968 702 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 689 IPR044974 GO:0006952
Seca7g04968 702 PRINTS Disease resistance protein signature 378 392 - -
Seca7g04968 702 PRINTS Disease resistance protein signature 670 686 - -
Seca7g04968 702 PRINTS Disease resistance protein signature 286 300 - -
Seca7g04968 702 PRINTS Disease resistance protein signature 210 225 - -
Seca7g04968 702 Pfam TIR domain 9 185 IPR000157 GO:0007165
Seca7g04968 702 SUPERFAMILY L domain-like 482 685 - -
Seca7g04968 702 SMART till_3 9 149 IPR000157 GO:0007165
Seca7g04968 702 SUPERFAMILY "Winged helix" DNA-binding domain 414 520 IPR036390 -
Seca7g04968 702 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 178 - -
Seca7g04968 702 Gene3D - 343 427 IPR042197 -
Seca7g04968 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04968 Seca-Chr7 144738086 144741668 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04968 5 700 WRKY Transcription Factor Family AT4G12020 32.377 1.18e-106 355