Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04962 ATGGCGGAGTACGACCTTACACCGCGTATGGCGCCGAATCTGGACAGGCACCTTGTTTTCCCTCTTTTGGAGTTTCTTCAAGAGAGACAACTCTACGATGACGACCATATTCTGAAGGCTAAGATCGAGCTTCTCAACAACACCAACATGGTTGACTACGCCATGGACATTCACAAGAGCCTCTACCACACCGAAGAAGTCCCTCAGGACATGGTTGAACGCAGGGCTGAAGTTGTCGCACGCCTCAAATCCCTTGAGGAGGCCGCTGCTCCACTCGTCGCTTTCCTCCAAAACGCCGCTGCCGTTCAGGAACTCAGGCCTGACAAACAGTATAATCTTCAGATGCTTAACGATAGATACCAGCAGATTGGTCCTACACAAATAGAGGCATTATACCAATATGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCTTTATGCACAAATAGTGAAAGGAGTCTGAGTGCATTGTGGGGAAAGCTTGCAGCTGAAATATTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGTTTGAAGGAAATCATTGACTCAAAGAGTTTTTCATCACCTTTGAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAGATAATTGATCTGTTTAATCAGGACAAGTATCTTAATGCAATCCAAACTAGTGCTCCGCACCTTCTACGATACTTGGCCACAGCATTTATTGTCAACAAGCGCAGGAGACCTCAATTCAAAGATTTTATCAAAGTTATTCAACAAGAGCAGCACTCATATAAGGACCCCATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTGATTCTCAATGACCCCTTCCTCGGTAAACGAGTTGAAGAAAGCAACTTTTCCACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAGACATACTGCAGAATACACCAACGCATTGACATGGGAGTTCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTGAACCTCATCCGTGGCTCAAAGCTTGATGCCAAAATTGACTCTGAAACTGGAACAGTTATTATGGAACCCAATCATCCCAATGTGTATGAGCAGCTGATAGACCACACCAAGGCCCTTAATGGGCGTACTTACAAGTTAGTCAGTCAACTTCTGGAACATGCACAAGCTCAAACAGCTCGATAA 1317 0.4374 MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDDHILKAKIELLNNTNMVDYAMDIHKSLYHTEEVPQDMVERRAEVVARLKSLEEAAAPLVAFLQNAAAVQELRPDKQYNLQMLNDRYQQIGPTQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGSKLDAKIDSETGTVIMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHAQAQTAR. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04962 438 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Seca7g04962 438 FunFam Eukaryotic translation initiation factor 3 subunit E 229 434 - -
Seca7g04962 438 SUPERFAMILY "Winged helix" DNA-binding domain 333 404 IPR036390 -
Seca7g04962 438 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 417 IPR000717 -
Seca7g04962 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 436 IPR016650 GO:0003743|GO:0005737|GO:0005852
Seca7g04962 438 Pfam PCI domain 286 400 IPR000717 -
Seca7g04962 438 PIRSF Transl_init_eIF3e 1 438 IPR016650 GO:0003743|GO:0005737|GO:0005852
Seca7g04962 438 ProSiteProfiles PCI domain profile. 220 404 IPR000717 -
Seca7g04962 438 SMART eIF3_N_2 5 138 IPR019010 -
Seca7g04962 438 Gene3D - 229 434 - -
Seca7g04962 438 CDD eIF3E 3 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Seca7g04962 438 Pfam eIF3 subunit 6 N terminal domain 5 138 IPR019010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04962 Seca-Chr7 144680395 144684083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04962 4 438 Eukaryotic Initiation Factors Gene Family AT3G57290 87.586 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04962 K03250 - gmx:100797748 855.899