Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04957 ATGGACACAGAGAGGGAAGATACCACATTGACTACTACTGCAGAATCCTCAACACCGGCTTCTGATGGTCAAAATCCTGTTTCTTCTGTTCATGCCACTTTGCCCCAGCCAATACAACCTGTTATTCCACCAGTTATTACCCCTCCCTCAGTTGTGCCTCCTCTTGCTCCAATTCCTTCAATTCCTCCCTCTCTTGTTGCCCGCCCGCTGGCGCCGCTTCCGGTTCGGCCACCGGTCGTTAGGCCACCCGTGCCACAAAATGGTGAGGTTGGATCAAGTGATTCCGATTCAGACCATGATGATACAGACACCAGAATTAACAAGGGCACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGAGACAGGAAAAAGCGATGCAGGAACTCATGATGAAGAGGCGTGCTGCTGCGCTTGCTGTTCCTACAAATGACATGGCCGTGCGAGCGCGTCTTCGCCACCTTGGCGAGCCGATAACACTGTTTGGTGAGAGGGAGATGGAGAGACGTGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCTCTTGAAGATGAAGAGGCTGCAGCTTCTGCTCCAAAAGATGAGGCTGAGGAAGAAATACAGTATCCATTTTACACTGAGGGGCCGAAGTCTCTCCTGGATGCCAGAATTGAGATTGCTAAATATTCTTTAGCAAGGGCAGCATTAAGGCTTCAACGTGCCCAGAGAAGAAGAGAGGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTAAAGCAGGCTGGGAATTTGAGTCTTGAGTTCAGTGAAATTGGAGATGATCGGCCACTTACTGGTTGCTCGTTCTCACGGGATGGCAAATGGCTTGCTACCTGTTCTCTTACTGGAGCTTCCAGGTTGTGGAGCATGCCTGAAATAAAAAAATCTTCGACCTTTAAGGGGCACACGGAGCGTGCTACGGATGTTGTTTATTCTCCTACGCATAATCATTTAGCAACTGCCTCTGCTGATCGGACTGCAAGGTATTGGAGTGATCAAGGGTCAATTTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGAAAGTACCTAGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGCCACAGCAGAAGTGTATATTCCTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGTCTGGATTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGGAGAAGTATTCTTGCACTTGAAGGTCATGTCAAGCCGATTCTTGGCATCAGTTTTTCACCTAATGGATATCATTTAGCCACGGGCGGTGAAGACAACACTTGTCGCATATGGGATTTGAGGAAGAAGAAATCCTTGTACACCATACCTGCTCACTCTAATTTAATATCCCAAGTTAAATTTGAGCCACAAGAGGGTTACTTTTTGGTTACTGCCTCTTATGACATGACAGCTAAGGTTTGGTCAGCCCGTGACTTTAAGCCCGTGAAGACGCTATCTGGGCATGAAGCAAAAGTTACTTCTCTGGATGTTCTTGGAGTAGATGGCGGGTATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGACTAGTGAACAAGCAATGGATGTTGACTAA 1731 0.4766 MDTEREDTTLTTTAESSTPASDGQNPVSSVHATLPQPIQPVIPPVITPPSVVPPLAPIPSIPPSLVARPLAPLPVRPPVVRPPVPQNGEVGSSDSDSDHDDTDTRINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKALEDEEAAASAPKDEAEEEIQYPFYTEGPKSLLDARIEIAKYSLARAALRLQRAQRRREDPDEDMDAEMDWALKQAGNLSLEFSEIGDDRPLTGCSFSRDGKWLATCSLTGASRLWSMPEIKKSSTFKGHTERATDVVYSPTHNHLATASADRTARYWSDQGSILKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYSLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGVDGGYIVTVSHDRTIKLWSSNMTSEQAMDVD. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04957 576 MobiDBLite consensus disorder prediction 1 113 - -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 403 IPR001680 GO:0005515
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 564 IPR001680 GO:0005515
Seca7g04957 576 ProSitePatterns Trp-Asp (WD) repeats signature. 423 437 IPR019775 -
Seca7g04957 576 SUPERFAMILY PRP4-like 129 184 IPR036285 -
Seca7g04957 576 SMART WD40_4 439 478 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 397 436 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 481 521 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 270 311 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 524 564 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 314 353 IPR001680 GO:0005515
Seca7g04957 576 SMART WD40_4 355 394 IPR001680 GO:0005515
Seca7g04957 576 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 261 445 - -
Seca7g04957 576 ProSitePatterns Trp-Asp (WD) repeats signature. 465 479 IPR019775 -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 353 - -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 530 IPR001680 GO:0005515
Seca7g04957 576 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Seca7g04957 576 PRINTS G protein beta WD-40 repeat signature 465 479 IPR020472 -
Seca7g04957 576 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Seca7g04957 576 MobiDBLite consensus disorder prediction 93 113 - -
Seca7g04957 576 CDD WD40 285 564 - -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 353 IPR001680 GO:0005515
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 446 480 - -
Seca7g04957 576 MobiDBLite consensus disorder prediction 10 35 - -
Seca7g04957 576 SUPERFAMILY WD40 repeat-like 275 563 IPR036322 GO:0005515
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 399 - -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 445 IPR001680 GO:0005515
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 564 - -
Seca7g04957 576 ProSitePatterns Trp-Asp (WD) repeats signature. 381 395 IPR019775 -
Seca7g04957 576 Gene3D - 259 445 IPR015943 GO:0005515
Seca7g04957 576 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 489 566 - -
Seca7g04957 576 Pfam pre-mRNA processing factor 4 (PRP4) like 151 177 IPR014906 -
Seca7g04957 576 Pfam WD domain, G-beta repeat 286 310 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 357 394 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 484 521 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 444 478 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 405 436 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 317 353 IPR001680 GO:0005515
Seca7g04957 576 Pfam WD domain, G-beta repeat 526 564 IPR001680 GO:0005515
Seca7g04957 576 SMART pr04_2 146 199 IPR014906 -
Seca7g04957 576 MobiDBLite consensus disorder prediction 37 84 - -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 487 IPR001680 GO:0005515
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 521 - -
Seca7g04957 576 PANTHER WD40 REPEAT PROTEIN 97 565 - -
Seca7g04957 576 Coils Coil 182 213 - -
Seca7g04957 576 Gene3D - 446 574 IPR015943 GO:0005515
Seca7g04957 576 Gene3D - 121 191 IPR036285 -
Seca7g04957 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 404 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04957 Seca-Chr7 144621652 144624989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04957 366 563 U-box Gene Family AT2G33340 22.072 2.17e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04957 K12662 - gmx:100788948 896.73