Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04925 ATGTCCCTGGAAGACTCTCTAAGATCTCTCTCCCTTGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGTGACGTCACCTTCCAAGTCGAGGGTCGTTTGGTCCACGCTCATCGCTGCATCTTAGCAGCCAGGAGCCTCTTCTTCCGGAAATTTTTCTGTGGGCCTGACCCGCCTTCTGGGCTCGACCCGACAGGAGGGAACTCTCGGGCCGGGCCTGGGACAGCCAGGCCCGGCGTGATACCGGTGAACTCGGTTGGGTACGAGGTGTTCTTGCTCCTCCTGCAGTTTCTCTACAGTGGACAAGTCTCTATTGTCCCTCAGAAGCATGAGCCAAGGCCTAATTGTGGTGAGAGAGGATGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTGGCATTGCTCACTCAATCTTATGTTTTCTGGGGTCTTGGGAATTTGGACAATTACTGCAACCGGAGAGGAGCAAGAGAAGAGAGTGTGGGTGTGGTTTTTGGAATGTGGGAACGGAGAATTCCTCTTAAACCTGTTTTCTTCACTTTCGGTTATAGGCTTGAGAAGCAATTGGCGAGCATGGTGGAGAAAGCGTCAATAGACGATGTGATGAAAGTACTAATAGCATCAAGAAAGCAAGAAATGCACCAACTATGGACCACATGTTCCCACCTTGTTGCCAAGTCAGGTTTACCCCCTGAAGTCCTAGCCAAACACCTCCCAATCGACGTAGTCGCAAAGATCGAAGAGCTCCGTCTCAAATCTTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCACCACCACCATCATCACCACCACCACCACGACCTCGGCGTCGCAGCCGCCGCTGACCTCGAGGACCAAAAAATCCGGCGAATGAGGCGCGCTCTTGACTCCTCCGATGTGGAACTCGTCAAACTGATGGTAATGGGAGAAGGCCTTAACCTCGACGAAGCATTGGCCTTACACTACGCCGTTGAGAATTGCAGCAGAGAAGTTGTGAAAGCCTTGTTGGAACTCGGTGCAGCTGATGTTAATTTCCCGGCAGGACCTGCCGGAAAGACGCCGCTTCATCTCGCCGCCGAGATGGTCTCGCCGGAGATGGTGGCGGTTTTGCTCGACCACCATGCGGATCCGAATGTGAGAACGGTTGATGGTGTGACTCCTTTGGATATTCTCAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCGGTCCCTGGATTAACTCACATTGAACCAAATAAGCTAAGGCTGTGTTTGGAGCTTGTTCAATCAGCTGCACTTGTTCTCTCACGTGAAGAAAGCAATGCTAATGCCAATGCTAATAATAATAATAACAACAATCACAATAACAATGCTTCTTCATCAGCAGCTATGTACCCTCCTATGAGTGAAGATCATAGCAGTAGTAGCAGTGGGAACAACAACATTGCTAGTAATCTTAATTTGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCTTCAGGTACAATGGGTGGTGGTGATGATGATAGCAGCCATAATAGCCAGAATCGTCATGGGTCACAAGGTGGTGGATGTGACCCAACAATGTACCACCACTCTCATGACTTTTAG 1653 0.5039 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGGNSRAGPGTARPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQSYVFWGLGNLDNYCNRRGAREESVGVVFGMWERRIPLKPVFFTFGYRLEKQLASMVEKASIDDVMKVLIASRKQEMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPLHHHHHHHHHHHHHDLGVAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHLAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREESNANANANNNNNNNHNNNASSSAAMYPPMSEDHSSSSSGNNNIASNLNLDSRLVYLNLGASGTMGGGDDDSSHNSQNRHGSQGGGCDPTMYHHSHDF. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04925 550 Pfam Ankyrin repeats (3 copies) 318 400 IPR002110 GO:0005515
Seca7g04925 550 FunFam regulatory protein NPR5 isoform X1 4 159 - -
Seca7g04925 550 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Seca7g04925 550 MobiDBLite consensus disorder prediction 520 536 - -
Seca7g04925 550 ProSiteProfiles Ankyrin repeat region circular profile. 370 400 - -
Seca7g04925 550 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 203 549 IPR044284 GO:0099402
Seca7g04925 550 FunFam regulatory protein NPR5 isoform X2 301 418 - -
Seca7g04925 550 SMART BTB_4 25 161 IPR000210 GO:0005515
Seca7g04925 550 SUPERFAMILY POZ domain 8 156 IPR011333 -
Seca7g04925 550 Pfam Domain of unknown function (DUF3420) 245 312 IPR024228 -
Seca7g04925 550 CDD BTB_POZ_NPR_plant 8 154 - -
Seca7g04925 550 MobiDBLite consensus disorder prediction 456 496 - -
Seca7g04925 550 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Seca7g04925 550 ProSiteProfiles Ankyrin repeat profile. 370 402 IPR002110 GO:0005515
Seca7g04925 550 MobiDBLite consensus disorder prediction 517 550 - -
Seca7g04925 550 Gene3D - 301 418 IPR036770 -
Seca7g04925 550 SUPERFAMILY Ankyrin repeat 329 413 IPR036770 -
Seca7g04925 550 Gene3D Potassium Channel Kv1.1; Chain A 3 157 IPR011333 -
Seca7g04925 550 SMART ANK_2a 335 365 IPR002110 GO:0005515
Seca7g04925 550 SMART ANK_2a 370 399 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04925 Seca-Chr7 144094506 144097547 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca7g04925 BTB 1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04925 K14508 - zju:107433767 732.635